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PyDISH No: 09409

PDB: 4pv1,
chainID: A, resSeq: 304
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 3.0 Å

axial ligand #1: HIS

chainID: A,
resSeq: 100,
Coordination distance[Å]: 2.206
molecule: Cytochrome b6
Organism: Mastigocladus laminosus

axial ligand #2: HIS

chainID: A,
resSeq: 202,
Coordination distance[Å]: 2.22
molecule: same as ligand #1

List of other hemes in pdb:4pv1

ID of heme Distortion Axial ligands on heme Function & structure
4pv1-A-303
sad. -0.09
ruf. +0.15
dom. -0.03
bre. -0.28
HIS chainID: A,
resSeq: 86,
molecule: Cytochrome b6
electron transporter
oligomeric count: 16
pocket vol.: 393.0 Å3
d(Fe-oop): 0.099 Å
HIS chainID: A, resSeq: 187,
molecule: Cytochrome b6
4pv1-A-305
sad. +0.33
ruf. +0.17
dom. -0.26
bre. -0.27
SMA chainID: A,
resSeq: 308,
molecule: STIGMATELLIN A
electron transporter
oligomeric count: 16
pocket vol.: 591.0 Å3
d(Fe-oop): 0.084 Å
HOH chainID: A, resSeq: 401,
molecule: water
4pv1-C-301
sad. -0.32
ruf. -0.62
dom. +0.21
bre. -0.23
TYR chainID: C,
resSeq: 1,
molecule: Apocytochrome f
electron transporter
oligomeric count: 16
pocket vol.: 356.0 Å3
d(Fe-oop): 0.054 Å
HIS chainID: C, resSeq: 26,
molecule: Apocytochrome f