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PyDISH No: 08996

PDB: 4l3z,
chainID: B, resSeq: 606
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.85 Å

axial ligand #1: HIS

chainID: B,
resSeq: 39,
Coordination distance[Å]: 1.896
molecule: Eight-heme nitrite reductase
EC number: 1.7.2.2
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: B,
resSeq: 234,
Coordination distance[Å]: 1.909
molecule: same as ligand #1

List of other hemes in pdb:4l3z

ID of heme	Distortion	Axial ligands on heme		Function & structure
4l3z-A-601	`sad. +0.58 ruf. -0.57 dom. +0.05 bre. -0.39`	LYS	chainID: A, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 424.0 Å³ d(Fe-oop): 0.003 Å
4l3z-A-601	`sad. +0.58 ruf. -0.57 dom. +0.05 bre. -0.39`	NO2	chainID: A, resSeq: 609, molecule: NITRITE ION
4l3z-A-602	`sad. +1.08 ruf. -0.51 dom. -0.10 bre. -0.33`	HIS	chainID: A, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 492.0 Å³ d(Fe-oop): 0.003 Å
4l3z-A-602	`sad. +1.08 ruf. -0.51 dom. -0.10 bre. -0.33`	HIS	chainID: A, resSeq: 398, molecule: Eight-heme nitrite reductase
4l3z-A-603	`sad. -0.18 ruf. -0.88 dom. +0.12 bre. -0.37`	HIS	chainID: A, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 422.0 Å³ d(Fe-oop): 0.011 Å
4l3z-A-603	`sad. -0.18 ruf. -0.88 dom. +0.12 bre. -0.37`	HIS	chainID: A, resSeq: 300, molecule: Eight-heme nitrite reductase
4l3z-A-604	`sad. +0.71 ruf. -0.85 dom. -0.23 bre. -0.30`	HIS	chainID: A, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 439.0 Å³ d(Fe-oop): 0.017 Å
4l3z-A-604	`sad. +0.71 ruf. -0.85 dom. -0.23 bre. -0.30`	HIS	chainID: A, resSeq: 491, molecule: Eight-heme nitrite reductase
4l3z-A-605	`sad. -0.38 ruf. -1.20 dom. +0.06 bre. -0.52`	HIS	chainID: A, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 461.0 Å³ d(Fe-oop): 0.003 Å
4l3z-A-605	`sad. -0.38 ruf. -1.20 dom. +0.06 bre. -0.52`	HIS	chainID: A, resSeq: 415, molecule: Eight-heme nitrite reductase
4l3z-A-606	`sad. -0.12 ruf. -0.66 dom. -0.09 bre. -0.50`	HIS	chainID: A, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 388.0 Å³ d(Fe-oop): 0.012 Å
4l3z-A-606	`sad. -0.12 ruf. -0.66 dom. -0.09 bre. -0.50`	HIS	chainID: A, resSeq: 234, molecule: Eight-heme nitrite reductase
4l3z-A-607	`sad. +0.42 ruf. -0.72 dom. -0.09 bre. -0.40`	HIS	chainID: A, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 502.0 Å³ d(Fe-oop): 0.004 Å
4l3z-A-607	`sad. +0.42 ruf. -0.72 dom. -0.09 bre. -0.40`	HIS	chainID: A, resSeq: 70, molecule: Eight-heme nitrite reductase
4l3z-A-608	`sad. +0.06 ruf. -0.43 dom. -0.12 bre. -0.52`	HIS	chainID: A, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 433.0 Å³ d(Fe-oop): 0.012 Å
4l3z-A-608	`sad. +0.06 ruf. -0.43 dom. -0.12 bre. -0.52`	HIS	chainID: A, resSeq: 44, molecule: Eight-heme nitrite reductase
4l3z-B-601	`sad. +0.57 ruf. -0.54 dom. +0.07 bre. -0.37`	LYS	chainID: B, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 409.0 Å³ d(Fe-oop): 0.001 Å
4l3z-B-601	`sad. +0.57 ruf. -0.54 dom. +0.07 bre. -0.37`	NO2	chainID: B, resSeq: 609, molecule: NITRITE ION
4l3z-B-602	`sad. +1.09 ruf. -0.51 dom. -0.11 bre. -0.24`	HIS	chainID: B, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 516.0 Å³ d(Fe-oop): 0.004 Å
4l3z-B-602	`sad. +1.09 ruf. -0.51 dom. -0.11 bre. -0.24`	HIS	chainID: B, resSeq: 398, molecule: Eight-heme nitrite reductase
4l3z-B-603	`sad. -0.20 ruf. -0.83 dom. +0.14 bre. -0.33`	HIS	chainID: B, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 409.0 Å³ d(Fe-oop): 0.013 Å
4l3z-B-603	`sad. -0.20 ruf. -0.83 dom. +0.14 bre. -0.33`	HIS	chainID: B, resSeq: 300, molecule: Eight-heme nitrite reductase
4l3z-B-604	`sad. +0.73 ruf. -0.82 dom. -0.23 bre. -0.30`	HIS	chainID: B, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 463.0 Å³ d(Fe-oop): 0.013 Å
4l3z-B-604	`sad. +0.73 ruf. -0.82 dom. -0.23 bre. -0.30`	HIS	chainID: B, resSeq: 491, molecule: Eight-heme nitrite reductase
4l3z-B-605	`sad. -0.45 ruf. -1.10 dom. -0.05 bre. -0.51`	HIS	chainID: B, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 487.0 Å³ d(Fe-oop): 0.007 Å
4l3z-B-605	`sad. -0.45 ruf. -1.10 dom. -0.05 bre. -0.51`	HIS	chainID: B, resSeq: 415, molecule: Eight-heme nitrite reductase
4l3z-B-607	`sad. +0.32 ruf. -0.60 dom. -0.11 bre. -0.39`	HIS	chainID: B, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 517.0 Å³ d(Fe-oop): 0.002 Å
4l3z-B-607	`sad. +0.32 ruf. -0.60 dom. -0.11 bre. -0.39`	HIS	chainID: B, resSeq: 70, molecule: Eight-heme nitrite reductase
4l3z-B-608	`sad. -0.08 ruf. -0.50 dom. -0.16 bre. -0.51`	HIS	chainID: B, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 425.0 Å³ d(Fe-oop): 0.018 Å
4l3z-B-608	`sad. -0.08 ruf. -0.50 dom. -0.16 bre. -0.51`	HIS	chainID: B, resSeq: 44, molecule: Eight-heme nitrite reductase