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PyDISH No: 08996

PDB: 4l3z,
chainID: B, resSeq: 606
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.85 Å

axial ligand #1: HIS

chainID: B,
resSeq: 39,
Coordination distance[Å]: 1.896
molecule: Eight-heme nitrite reductase
EC number: 1.7.2.2
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: B,
resSeq: 234,
Coordination distance[Å]: 1.909
molecule: same as ligand #1

List of other hemes in pdb:4l3z

ID of heme Distortion Axial ligands on heme Function & structure
4l3z-A-601
sad. +0.58
ruf. -0.57
dom. +0.05
bre. -0.39
LYS chainID: A,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 424.0 Å3
d(Fe-oop): 0.003 Å
NO2 chainID: A, resSeq: 609,
molecule: NITRITE ION
4l3z-A-602
sad. +1.08
ruf. -0.51
dom. -0.10
bre. -0.33
HIS chainID: A,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 492.0 Å3
d(Fe-oop): 0.003 Å
HIS chainID: A, resSeq: 398,
molecule: Eight-heme nitrite reductase
4l3z-A-603
sad. -0.18
ruf. -0.88
dom. +0.12
bre. -0.37
HIS chainID: A,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 422.0 Å3
d(Fe-oop): 0.011 Å
HIS chainID: A, resSeq: 300,
molecule: Eight-heme nitrite reductase
4l3z-A-604
sad. +0.71
ruf. -0.85
dom. -0.23
bre. -0.30
HIS chainID: A,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 439.0 Å3
d(Fe-oop): 0.017 Å
HIS chainID: A, resSeq: 491,
molecule: Eight-heme nitrite reductase
4l3z-A-605
sad. -0.38
ruf. -1.20
dom. +0.06
bre. -0.52
HIS chainID: A,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 461.0 Å3
d(Fe-oop): 0.003 Å
HIS chainID: A, resSeq: 415,
molecule: Eight-heme nitrite reductase
4l3z-A-606
sad. -0.12
ruf. -0.66
dom. -0.09
bre. -0.50
HIS chainID: A,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 388.0 Å3
d(Fe-oop): 0.012 Å
HIS chainID: A, resSeq: 234,
molecule: Eight-heme nitrite reductase
4l3z-A-607
sad. +0.42
ruf. -0.72
dom. -0.09
bre. -0.40
HIS chainID: A,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 502.0 Å3
d(Fe-oop): 0.004 Å
HIS chainID: A, resSeq: 70,
molecule: Eight-heme nitrite reductase
4l3z-A-608
sad. +0.06
ruf. -0.43
dom. -0.12
bre. -0.52
HIS chainID: A,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 433.0 Å3
d(Fe-oop): 0.012 Å
HIS chainID: A, resSeq: 44,
molecule: Eight-heme nitrite reductase
4l3z-B-601
sad. +0.57
ruf. -0.54
dom. +0.07
bre. -0.37
LYS chainID: B,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 409.0 Å3
d(Fe-oop): 0.001 Å
NO2 chainID: B, resSeq: 609,
molecule: NITRITE ION
4l3z-B-602
sad. +1.09
ruf. -0.51
dom. -0.11
bre. -0.24
HIS chainID: B,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 516.0 Å3
d(Fe-oop): 0.004 Å
HIS chainID: B, resSeq: 398,
molecule: Eight-heme nitrite reductase
4l3z-B-603
sad. -0.20
ruf. -0.83
dom. +0.14
bre. -0.33
HIS chainID: B,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 409.0 Å3
d(Fe-oop): 0.013 Å
HIS chainID: B, resSeq: 300,
molecule: Eight-heme nitrite reductase
4l3z-B-604
sad. +0.73
ruf. -0.82
dom. -0.23
bre. -0.30
HIS chainID: B,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 463.0 Å3
d(Fe-oop): 0.013 Å
HIS chainID: B, resSeq: 491,
molecule: Eight-heme nitrite reductase
4l3z-B-605
sad. -0.45
ruf. -1.10
dom. -0.05
bre. -0.51
HIS chainID: B,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 487.0 Å3
d(Fe-oop): 0.007 Å
HIS chainID: B, resSeq: 415,
molecule: Eight-heme nitrite reductase
4l3z-B-607
sad. +0.32
ruf. -0.60
dom. -0.11
bre. -0.39
HIS chainID: B,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 517.0 Å3
d(Fe-oop): 0.002 Å
HIS chainID: B, resSeq: 70,
molecule: Eight-heme nitrite reductase
4l3z-B-608
sad. -0.08
ruf. -0.50
dom. -0.16
bre. -0.51
HIS chainID: B,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 425.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: B, resSeq: 44,
molecule: Eight-heme nitrite reductase