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PyDISH No: 08977

PDB: 4l3y,
chainID: B, resSeq: 603
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.95 Å

axial ligand #1: HIS

chainID: B,
resSeq: 119,
Coordination distance[Å]: 1.949
molecule: Eight-heme nitrite reductase
EC number: 1.7.2.2
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: B,
resSeq: 300,
Coordination distance[Å]: 1.945
molecule: same as ligand #1

List of other hemes in pdb:4l3y

ID of heme	Distortion	Axial ligands on heme		Function & structure
4l3y-A-601	`sad. +0.58 ruf. -0.60 dom. +0.08 bre. -0.43`	LYS	chainID: A, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 424.0 Å³ d(Fe-oop): 0.008 Å
4l3y-A-601	`sad. +0.58 ruf. -0.60 dom. +0.08 bre. -0.43`	NO2	chainID: A, resSeq: 609, molecule: NITRITE ION
4l3y-A-602	`sad. +1.04 ruf. -0.49 dom. -0.10 bre. -0.37`	HIS	chainID: A, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 490.0 Å³ d(Fe-oop): 0.005 Å
4l3y-A-602	`sad. +1.04 ruf. -0.49 dom. -0.10 bre. -0.37`	HIS	chainID: A, resSeq: 398, molecule: Eight-heme nitrite reductase
4l3y-A-603	`sad. -0.19 ruf. -0.90 dom. +0.13 bre. -0.42`	HIS	chainID: A, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 423.0 Å³ d(Fe-oop): 0.012 Å
4l3y-A-603	`sad. -0.19 ruf. -0.90 dom. +0.13 bre. -0.42`	HIS	chainID: A, resSeq: 300, molecule: Eight-heme nitrite reductase
4l3y-A-604	`sad. +0.75 ruf. -0.82 dom. -0.19 bre. -0.32`	HIS	chainID: A, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 440.0 Å³ d(Fe-oop): 0.011 Å
4l3y-A-604	`sad. +0.75 ruf. -0.82 dom. -0.19 bre. -0.32`	HIS	chainID: A, resSeq: 491, molecule: Eight-heme nitrite reductase
4l3y-A-605	`sad. -0.36 ruf. -1.15 dom. +0.03 bre. -0.56`	HIS	chainID: A, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 482.0 Å³ d(Fe-oop): 0.002 Å
4l3y-A-605	`sad. -0.36 ruf. -1.15 dom. +0.03 bre. -0.56`	HIS	chainID: A, resSeq: 415, molecule: Eight-heme nitrite reductase
4l3y-A-606	`sad. -0.13 ruf. -0.62 dom. -0.06 bre. -0.52`	HIS	chainID: A, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 379.0 Å³ d(Fe-oop): 0.009 Å
4l3y-A-606	`sad. -0.13 ruf. -0.62 dom. -0.06 bre. -0.52`	HIS	chainID: A, resSeq: 234, molecule: Eight-heme nitrite reductase
4l3y-A-607	`sad. +0.39 ruf. -0.73 dom. -0.08 bre. -0.42`	HIS	chainID: A, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 505.0 Å³ d(Fe-oop): 0.009 Å
4l3y-A-607	`sad. +0.39 ruf. -0.73 dom. -0.08 bre. -0.42`	HIS	chainID: A, resSeq: 70, molecule: Eight-heme nitrite reductase
4l3y-A-608	`sad. +0.02 ruf. -0.49 dom. -0.15 bre. -0.58`	HIS	chainID: A, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 431.0 Å³ d(Fe-oop): 0.014 Å
4l3y-A-608	`sad. +0.02 ruf. -0.49 dom. -0.15 bre. -0.58`	HIS	chainID: A, resSeq: 44, molecule: Eight-heme nitrite reductase
4l3y-B-601	`sad. +0.55 ruf. -0.56 dom. +0.07 bre. -0.41`	LYS	chainID: B, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 409.0 Å³ d(Fe-oop): 0.002 Å
4l3y-B-601	`sad. +0.55 ruf. -0.56 dom. +0.07 bre. -0.41`	NO2	chainID: B, resSeq: 609, molecule: NITRITE ION
4l3y-B-602	`sad. +1.08 ruf. -0.53 dom. -0.11 bre. -0.27`	HIS	chainID: B, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 515.0 Å³ d(Fe-oop): 0.004 Å
4l3y-B-602	`sad. +1.08 ruf. -0.53 dom. -0.11 bre. -0.27`	HIS	chainID: B, resSeq: 398, molecule: Eight-heme nitrite reductase
4l3y-B-604	`sad. +0.73 ruf. -0.82 dom. -0.20 bre. -0.34`	HIS	chainID: B, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 460.0 Å³ d(Fe-oop): 0.007 Å
4l3y-B-604	`sad. +0.73 ruf. -0.82 dom. -0.20 bre. -0.34`	HIS	chainID: B, resSeq: 491, molecule: Eight-heme nitrite reductase
4l3y-B-605	`sad. -0.40 ruf. -1.14 dom. -0.01 bre. -0.53`	HIS	chainID: B, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 492.0 Å³ d(Fe-oop): 0.005 Å
4l3y-B-605	`sad. -0.40 ruf. -1.14 dom. -0.01 bre. -0.53`	HIS	chainID: B, resSeq: 415, molecule: Eight-heme nitrite reductase
4l3y-B-606	`sad. -0.12 ruf. -0.56 dom. -0.10 bre. -0.52`	HIS	chainID: B, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 373.0 Å³ d(Fe-oop): 0.002 Å
4l3y-B-606	`sad. -0.12 ruf. -0.56 dom. -0.10 bre. -0.52`	HIS	chainID: B, resSeq: 234, molecule: Eight-heme nitrite reductase
4l3y-B-607	`sad. +0.32 ruf. -0.64 dom. -0.10 bre. -0.42`	HIS	chainID: B, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 513.0 Å³ d(Fe-oop): 0.003 Å
4l3y-B-607	`sad. +0.32 ruf. -0.64 dom. -0.10 bre. -0.42`	HIS	chainID: B, resSeq: 70, molecule: Eight-heme nitrite reductase
4l3y-B-608	`sad. -0.05 ruf. -0.53 dom. -0.16 bre. -0.55`	HIS	chainID: B, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 437.0 Å³ d(Fe-oop): 0.013 Å
4l3y-B-608	`sad. -0.05 ruf. -0.53 dom. -0.16 bre. -0.55`	HIS	chainID: B, resSeq: 44, molecule: Eight-heme nitrite reductase