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PyDISH No: 08954

PDB: 4l3x,
chainID: A, resSeq: 604
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.85 Å

axial ligand #1: HIS

chainID: A,
resSeq: 383,
Coordination distance[Å]: 1.964
molecule: Eight-heme nitrite reductase
EC number: 1.7.2.2
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: A,
resSeq: 491,
Coordination distance[Å]: 1.936
molecule: same as ligand #1

List of other hemes in pdb:4l3x

ID of heme	Distortion	Axial ligands on heme		Function & structure
4l3x-A-601	`sad. +0.57 ruf. -0.57 dom. +0.02 bre. -0.37`	LYS	chainID: A, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 422.0 Å³ d(Fe-oop): 0.005 Å
4l3x-A-601	`sad. +0.57 ruf. -0.57 dom. +0.02 bre. -0.37`	NO2	chainID: A, resSeq: 609, molecule: NITRITE ION
4l3x-A-602	`sad. +1.06 ruf. -0.53 dom. -0.08 bre. -0.33`	HIS	chainID: A, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 498.0 Å³ d(Fe-oop): 0.003 Å
4l3x-A-602	`sad. +1.06 ruf. -0.53 dom. -0.08 bre. -0.33`	HIS	chainID: A, resSeq: 398, molecule: Eight-heme nitrite reductase
4l3x-A-603	`sad. -0.22 ruf. -0.87 dom. +0.11 bre. -0.40`	HIS	chainID: A, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 427.0 Å³ d(Fe-oop): 0.013 Å
4l3x-A-603	`sad. -0.22 ruf. -0.87 dom. +0.11 bre. -0.40`	HIS	chainID: A, resSeq: 300, molecule: Eight-heme nitrite reductase
4l3x-A-605	`sad. -0.38 ruf. -1.23 dom. +0.03 bre. -0.52`	HIS	chainID: A, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 464.0 Å³ d(Fe-oop): 0.000 Å
4l3x-A-605	`sad. -0.38 ruf. -1.23 dom. +0.03 bre. -0.52`	HIS	chainID: A, resSeq: 415, molecule: Eight-heme nitrite reductase
4l3x-A-606	`sad. -0.13 ruf. -0.67 dom. -0.07 bre. -0.48`	HIS	chainID: A, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 381.0 Å³ d(Fe-oop): 0.008 Å
4l3x-A-606	`sad. -0.13 ruf. -0.67 dom. -0.07 bre. -0.48`	HIS	chainID: A, resSeq: 234, molecule: Eight-heme nitrite reductase
4l3x-A-607	`sad. +0.42 ruf. -0.69 dom. -0.10 bre. -0.42`	HIS	chainID: A, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 503.0 Å³ d(Fe-oop): 0.005 Å
4l3x-A-607	`sad. +0.42 ruf. -0.69 dom. -0.10 bre. -0.42`	HIS	chainID: A, resSeq: 70, molecule: Eight-heme nitrite reductase
4l3x-A-608	`sad. +0.05 ruf. -0.47 dom. -0.13 bre. -0.52`	HIS	chainID: A, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 430.0 Å³ d(Fe-oop): 0.013 Å
4l3x-A-608	`sad. +0.05 ruf. -0.47 dom. -0.13 bre. -0.52`	HIS	chainID: A, resSeq: 44, molecule: Eight-heme nitrite reductase
4l3x-B-601	`sad. +0.55 ruf. -0.55 dom. +0.06 bre. -0.38`	LYS	chainID: B, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 413.0 Å³ d(Fe-oop): 0.005 Å
4l3x-B-601	`sad. +0.55 ruf. -0.55 dom. +0.06 bre. -0.38`	NO2	chainID: B, resSeq: 609, molecule: NITRITE ION
4l3x-B-602	`sad. +1.05 ruf. -0.49 dom. -0.10 bre. -0.26`	HIS	chainID: B, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 513.0 Å³ d(Fe-oop): 0.006 Å
4l3x-B-602	`sad. +1.05 ruf. -0.49 dom. -0.10 bre. -0.26`	HIS	chainID: B, resSeq: 398, molecule: Eight-heme nitrite reductase
4l3x-B-603	`sad. -0.22 ruf. -0.82 dom. +0.14 bre. -0.35`	HIS	chainID: B, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 413.0 Å³ d(Fe-oop): 0.008 Å
4l3x-B-603	`sad. -0.22 ruf. -0.82 dom. +0.14 bre. -0.35`	HIS	chainID: B, resSeq: 300, molecule: Eight-heme nitrite reductase
4l3x-B-604	`sad. +0.75 ruf. -0.82 dom. -0.23 bre. -0.31`	HIS	chainID: B, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 465.0 Å³ d(Fe-oop): 0.011 Å
4l3x-B-604	`sad. +0.75 ruf. -0.82 dom. -0.23 bre. -0.31`	HIS	chainID: B, resSeq: 491, molecule: Eight-heme nitrite reductase
4l3x-B-605	`sad. -0.45 ruf. -1.13 dom. -0.00 bre. -0.50`	HIS	chainID: B, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 475.0 Å³ d(Fe-oop): 0.001 Å
4l3x-B-605	`sad. -0.45 ruf. -1.13 dom. -0.00 bre. -0.50`	HIS	chainID: B, resSeq: 415, molecule: Eight-heme nitrite reductase
4l3x-B-606	`sad. -0.15 ruf. -0.54 dom. -0.10 bre. -0.46`	HIS	chainID: B, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 364.0 Å³ d(Fe-oop): 0.009 Å
4l3x-B-606	`sad. -0.15 ruf. -0.54 dom. -0.10 bre. -0.46`	HIS	chainID: B, resSeq: 234, molecule: Eight-heme nitrite reductase
4l3x-B-607	`sad. +0.33 ruf. -0.60 dom. -0.09 bre. -0.41`	HIS	chainID: B, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 493.0 Å³ d(Fe-oop): 0.003 Å
4l3x-B-607	`sad. +0.33 ruf. -0.60 dom. -0.09 bre. -0.41`	HIS	chainID: B, resSeq: 70, molecule: Eight-heme nitrite reductase
4l3x-B-608	`sad. -0.07 ruf. -0.51 dom. -0.14 bre. -0.51`	HIS	chainID: B, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 428.0 Å³ d(Fe-oop): 0.017 Å
4l3x-B-608	`sad. -0.07 ruf. -0.51 dom. -0.14 bre. -0.51`	HIS	chainID: B, resSeq: 44, molecule: Eight-heme nitrite reductase