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PyDISH No: 08574

PDB: 4h13,
chainID: C, resSeq: 302
heme type: B

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 3.07 Å

axial ligand #1: TYR

chainID: C,
resSeq: 1,
Coordination distance[Å]: 2.458
molecule: Apocytochrome f
Organism: Mastigocladus laminosus

axial ligand #2: HIS

chainID: C,
resSeq: 26,
Coordination distance[Å]: 2.249
molecule: same as ligand #1

List of other hemes in pdb:4h13

ID of heme Distortion Axial ligands on heme Function & structure
4h13-A-302
sad. -0.16
ruf. +0.03
dom. -0.13
bre. -0.20
HIS chainID: A,
resSeq: 86,
molecule: Cytochrome b6
electron transporter
oligomeric count: 16
pocket vol.: 385.0 Å3
d(Fe-oop): 0.063 Å
HIS chainID: A, resSeq: 187,
molecule: Cytochrome b6
4h13-A-303
sad. -0.88
ruf. -0.46
dom. +0.09
bre. -0.15
HIS chainID: A,
resSeq: 100,
molecule: Cytochrome b6
electron transporter
oligomeric count: 16
pocket vol.: 389.0 Å3
d(Fe-oop): 0.015 Å
HIS chainID: A, resSeq: 202,
molecule: Cytochrome b6
4h13-A-304
sad. +0.17
ruf. +0.06
dom. -0.21
bre. -0.27
TDS chainID: B,
resSeq: 201,
molecule: 8-HYDROXY-5,7-DIMETHOXY-3-METHYL-2-TRIDECYL-4H-CHROMEN-4-ONE
electron transporter
oligomeric count: 16
pocket vol.: 601.0 Å3
d(Fe-oop): 0.219 Å
HOH chainID: A, resSeq: 402,
molecule: water