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PyDISH No: 08188

PDB: 4d6u,
chainID: C, resSeq: 501
heme type: B

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 4.09 Å

axial ligand #1: HIS

chainID: C,
resSeq: 83,
Coordination distance[Å]: 2.161
molecule: CYTOCHROME B
Organism: BOS TAURUS

axial ligand #2: HIS

chainID: C,
resSeq: 182,
Coordination distance[Å]: 2.05
molecule: same as ligand #1

List of other hemes in pdb:4d6u

ID of heme Distortion Axial ligands on heme Function & structure
4d6u-C-502
sad. -0.35
ruf. -0.64
dom. +0.40
bre. +0.08
HIS chainID: C,
resSeq: 97,
molecule: CYTOCHROME B
electron transporter
oligomeric count: 10
pocket vol.: 385.0 Å3
d(Fe-oop): 0.053 Å
HIS chainID: C, resSeq: 196,
molecule: CYTOCHROME B
4d6u-D-501
sad. -0.02
ruf. -0.45
dom. +0.01
bre. -0.63
HIS chainID: D,
resSeq: 41,
molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL
translocase
oligomeric count: 10
pocket vol.: 445.0 Å3
d(Fe-oop): 0.007 Å
MET chainID: D, resSeq: 160,
molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL
4d6u-P-501
sad. -0.04
ruf. -0.43
dom. -0.05
bre. -0.03
HIS chainID: P,
resSeq: 83,
molecule: CYTOCHROME B
electron transporter
oligomeric count: 10
pocket vol.: 412.0 Å3
d(Fe-oop): 0.062 Å
HIS chainID: P, resSeq: 182,
molecule: CYTOCHROME B
4d6u-P-502
sad. -0.40
ruf. -0.66
dom. +0.38
bre. +0.00
HIS chainID: P,
resSeq: 97,
molecule: CYTOCHROME B
electron transporter
oligomeric count: 10
pocket vol.: 408.0 Å3
d(Fe-oop): 0.059 Å
HIS chainID: P, resSeq: 196,
molecule: CYTOCHROME B
4d6u-Q-501
sad. -0.03
ruf. +0.84
dom. +0.03
bre. -0.59
HIS chainID: Q,
resSeq: 41,
molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL
translocase
oligomeric count: 10
pocket vol.: 473.0 Å3
d(Fe-oop): 0.001 Å
MET chainID: Q, resSeq: 160,
molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL