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PyDISH No: 08184

PDB: 4d6t,
chainID: D, resSeq: 501
heme type: C

distortion

Protein data

function: translocase
experiment: X-RAY DIFFRACTION
resolution: 3.57 Å

axial ligand #1: HIS

chainID: D,
resSeq: 41,
Coordination distance[Å]: 2.021
molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL
Organism: BOS TAURUS

axial ligand #2: MET

chainID: D,
resSeq: 160,
Coordination distance[Å]: 2.329
molecule: same as ligand #1

List of other hemes in pdb:4d6t

ID of heme Distortion Axial ligands on heme Function & structure
4d6t-C-501
sad. +0.01
ruf. -0.12
dom. -0.02
bre. -0.00
HIS chainID: C,
resSeq: 83,
molecule: CYTOCHROME B
electron transporter
oligomeric count: 10
pocket vol.: 433.0 Å3
d(Fe-oop): 0.022 Å
HIS chainID: C, resSeq: 182,
molecule: CYTOCHROME B
4d6t-C-502
sad. -0.38
ruf. -0.28
dom. +0.31
bre. +0.10
HIS chainID: C,
resSeq: 97,
molecule: CYTOCHROME B
electron transporter
oligomeric count: 10
pocket vol.: 424.0 Å3
d(Fe-oop): 0.064 Å
HIS chainID: C, resSeq: 196,
molecule: CYTOCHROME B
4d6t-P-501
sad. +0.01
ruf. -0.15
dom. -0.02
bre. -0.06
HIS chainID: P,
resSeq: 83,
molecule: CYTOCHROME B
electron transporter
oligomeric count: 10
pocket vol.: 433.0 Å3
d(Fe-oop): 0.021 Å
HIS chainID: P, resSeq: 182,
molecule: CYTOCHROME B
4d6t-P-502
sad. -0.32
ruf. -0.50
dom. +0.24
bre. +0.02
HIS chainID: P,
resSeq: 97,
molecule: CYTOCHROME B
electron transporter
oligomeric count: 10
pocket vol.: 406.0 Å3
d(Fe-oop): 0.017 Å
HIS chainID: P, resSeq: 196,
molecule: CYTOCHROME B
4d6t-Q-501
sad. -0.03
ruf. +0.01
dom. -0.04
bre. -0.62
HIS chainID: Q,
resSeq: 41,
molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL
translocase
oligomeric count: 10
pocket vol.: 463.0 Å3
d(Fe-oop): 0.032 Å
MET chainID: Q, resSeq: 160,
molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL