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PyDISH No: 07575

PDB: 3vef,
chainID: A, resSeq: 401
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.64 Å

axial ligand #1: HIS

chainID: A,
resSeq: 226,
Coordination distance[Å]: 1.88
molecule: DypB
EC number: 1.11.1.-
Organism: Rhodococcus jostii

axial ligand #2: HOH

chainID: A,
resSeq: 612,
Coordination distance[Å]: 1.915
molecule: water

List of other hemes in pdb:3vef

ID of heme Distortion Axial ligands on heme Function & structure
3vef-B-401
sad. +0.21
ruf. -0.05
dom. -0.05
bre. -0.33
HIS chainID: B,
resSeq: 226,
molecule: DypB
oxidoreductase
oligomeric count: 6
pocket vol.: 432.0 Å3
d(Fe-oop): 0.274 Å
HOH chainID: B, resSeq: 620,
molecule: water
3vef-C-401
sad. +0.29
ruf. +0.11
dom. -0.16
bre. -0.28
HIS chainID: C,
resSeq: 226,
molecule: DypB
oxidoreductase
oligomeric count: 6
pocket vol.: 419.0 Å3
d(Fe-oop): 0.301 Å
HOH chainID: C, resSeq: 556,
molecule: water