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PyDISH No: 07572

PDB: 3vee,
chainID: A, resSeq: 401
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.4 Å

axial ligand #1: HIS

chainID: A,
resSeq: 226,
Coordination distance[Å]: 1.989
molecule: DypB
EC number: 1.11.1.-
Organism: Rhodococcus jostii

axial ligand #2: HOH

chainID: A,
resSeq: 655,
Coordination distance[Å]: 2.111
molecule: water

List of other hemes in pdb:3vee

ID of heme Distortion Axial ligands on heme Function & structure
3vee-B-401
sad. +0.23
ruf. +0.09
dom. -0.06
bre. -0.08
HIS chainID: B,
resSeq: 226,
molecule: DypB
oxidoreductase
oligomeric count: 6
pocket vol.: 420.0 Å3
d(Fe-oop): 0.007 Å
HOH chainID: B, resSeq: 644,
molecule: water
3vee-C-401
sad. +0.27
ruf. +0.12
dom. -0.03
bre. -0.20
HIS chainID: C,
resSeq: 226,
molecule: DypB
oxidoreductase
oligomeric count: 6
pocket vol.: 412.0 Å3
d(Fe-oop): 0.022 Å
HOH chainID: C, resSeq: 583,
molecule: water