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PyDISH No: 07557

PDB: 3uu9,
chainID: B, resSeq: 605
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.2 Å

axial ligand #1: HIS

chainID: B,
resSeq: 372,
Coordination distance[Å]: 1.905
molecule: Eight-heme nitrite reductase
EC number: 1.7.2.-
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: B,
resSeq: 415,
Coordination distance[Å]: 1.863
molecule: same as ligand #1

List of other hemes in pdb:3uu9

ID of heme Distortion Axial ligands on heme Function & structure
3uu9-A-601
sad. +0.63
ruf. -0.46
dom. +0.13
bre. -0.09
LYS chainID: A,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 393.0 Å3
d(Fe-oop): 0.117 Å
HOH chainID: A, resSeq: 1000,
molecule: water
3uu9-A-602
sad. +1.04
ruf. -0.25
dom. -0.04
bre. +0.09
HIS chainID: A,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 462.0 Å3
d(Fe-oop): 0.072 Å
HIS chainID: A, resSeq: 398,
molecule: Eight-heme nitrite reductase
3uu9-A-603
sad. -0.26
ruf. -0.80
dom. +0.22
bre. -0.03
HIS chainID: A,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 389.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: A, resSeq: 300,
molecule: Eight-heme nitrite reductase
3uu9-A-604
sad. +0.72
ruf. -0.61
dom. -0.09
bre. +0.01
HIS chainID: A,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 430.0 Å3
d(Fe-oop): 0.059 Å
HIS chainID: A, resSeq: 491,
molecule: Eight-heme nitrite reductase
3uu9-A-605
sad. -0.45
ruf. -0.77
dom. +0.27
bre. -0.11
HIS chainID: A,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 544.0 Å3
d(Fe-oop): 0.049 Å
HIS chainID: A, resSeq: 415,
molecule: Eight-heme nitrite reductase
3uu9-A-606
sad. -0.12
ruf. -0.39
dom. -0.01
bre. -0.16
HIS chainID: A,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 340.0 Å3
d(Fe-oop): 0.071 Å
HIS chainID: A, resSeq: 234,
molecule: Eight-heme nitrite reductase
3uu9-A-607
sad. +0.43
ruf. -0.46
dom. -0.01
bre. -0.04
HIS chainID: A,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 488.0 Å3
d(Fe-oop): 0.008 Å
HIS chainID: A, resSeq: 70,
molecule: Eight-heme nitrite reductase
3uu9-A-608
sad. -0.02
ruf. -0.37
dom. +0.01
bre. -0.26
HIS chainID: A,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 409.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: A, resSeq: 44,
molecule: Eight-heme nitrite reductase
3uu9-B-601
sad. +0.59
ruf. -0.42
dom. +0.17
bre. -0.10
LYS chainID: B,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 366.0 Å3
d(Fe-oop): 0.060 Å
HOH chainID: B, resSeq: 1012,
molecule: water
3uu9-B-602
sad. +1.14
ruf. -0.27
dom. -0.05
bre. +0.00
HIS chainID: B,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 485.0 Å3
d(Fe-oop): 0.058 Å
HIS chainID: B, resSeq: 398,
molecule: Eight-heme nitrite reductase
3uu9-B-603
sad. -0.23
ruf. -0.75
dom. +0.22
bre. -0.04
HIS chainID: B,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 389.0 Å3
d(Fe-oop): 0.023 Å
HIS chainID: B, resSeq: 300,
molecule: Eight-heme nitrite reductase
3uu9-B-604
sad. +0.76
ruf. -0.52
dom. -0.11
bre. +0.01
HIS chainID: B,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 416.0 Å3
d(Fe-oop): 0.086 Å
HIS chainID: B, resSeq: 491,
molecule: Eight-heme nitrite reductase
3uu9-B-606
sad. -0.18
ruf. -0.42
dom. +0.04
bre. -0.23
HIS chainID: B,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 328.0 Å3
d(Fe-oop): 0.041 Å
HIS chainID: B, resSeq: 234,
molecule: Eight-heme nitrite reductase
3uu9-B-607
sad. +0.32
ruf. -0.43
dom. +0.06
bre. +0.09
HIS chainID: B,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 521.0 Å3
d(Fe-oop): 0.067 Å
HIS chainID: B, resSeq: 70,
molecule: Eight-heme nitrite reductase
3uu9-B-608
sad. -0.24
ruf. -0.31
dom. -0.04
bre. -0.27
HIS chainID: B,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 400.0 Å3
d(Fe-oop): 0.090 Å
HIS chainID: B, resSeq: 44,
molecule: Eight-heme nitrite reductase