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PyDISH No: 07407

PDB: 3ubv,
chainID: D, resSeq: 140
heme type: B

distortion

Protein data

function: oxygen carrier
experiment: X-RAY DIFFRACTION
resolution: 3.2 Å

axial ligand #1: HIS

chainID: D,
resSeq: 82,
Coordination distance[Å]: 1.909
molecule: Hemoglobin-like flavoprotein
Organism: Methylacidiphilum infernorum V4

axial ligand #2: OXY

chainID: D,
resSeq: 141,
Coordination distance[Å]: 2.215
molecule: OXYGEN MOLECULE

List of other hemes in pdb:3ubv

ID of heme Distortion Axial ligands on heme Function & structure
3ubv-A-140
sad. -0.24
ruf. -1.15
dom. +0.28
bre. +0.09
HIS chainID: A,
resSeq: 82,
molecule: Hemoglobin-like flavoprotein
oxygen carrier
oligomeric count: 3
pocket vol.: 429.0 Å3
d(Fe-oop): 0.023 Å
OXY chainID: A, resSeq: 141,
molecule: OXYGEN MOLECULE
3ubv-G-140
sad. -0.04
ruf. -0.79
dom. +0.28
bre. -0.03
HIS chainID: G,
resSeq: 82,
molecule: Hemoglobin-like flavoprotein
oxygen carrier
oligomeric count: 3
pocket vol.: 479.0 Å3
d(Fe-oop): 0.019 Å
OXY chainID: G, resSeq: 141,
molecule: OXYGEN MOLECULE