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Protein data
function: oxidoreductaseexperiment: X-RAY DIFFRACTION
resolution: 2.0 Å
axial ligand #1: HIS
chainID: B,resSeq: 30,
Coordination distance[Å]: 1.938
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio paradoxus
axial ligand #2: HIS
chainID: B,resSeq: 70,
Coordination distance[Å]: 1.918
molecule: same as ligand #1
List of other hemes in pdb:3ttb
ID of heme | Distortion | Axial ligands on heme | Function & structure | |
---|---|---|---|---|
3ttb-A-1004 |
sad. +0.66 ruf. -0.49 dom. +0.09 bre. +0.03 |
LYS | chainID: A, resSeq: 188, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 387.0 Å3 d(Fe-oop): 0.019 Å |
SO3 | chainID: A, resSeq: 526, molecule: SULFITE ION |
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3ttb-A-1005 |
sad. +0.99 ruf. -0.46 dom. +0.10 bre. +0.04 |
HIS | chainID: A, resSeq: 231, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 460.0 Å3 d(Fe-oop): 0.019 Å |
HIS | chainID: A, resSeq: 398, molecule: Eight-heme nitrite reductase |
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3ttb-A-1006 |
sad. -0.20 ruf. -0.85 dom. +0.13 bre. -0.01 |
HIS | chainID: A, resSeq: 119, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 366.0 Å3 d(Fe-oop): 0.002 Å |
HIS | chainID: A, resSeq: 300, molecule: Eight-heme nitrite reductase |
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3ttb-A-1007 |
sad. +0.66 ruf. -0.57 dom. -0.12 bre. +0.03 |
HIS | chainID: A, resSeq: 383, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 417.0 Å3 d(Fe-oop): 0.074 Å |
HIS | chainID: A, resSeq: 491, molecule: Eight-heme nitrite reductase |
|||
3ttb-A-1008 |
sad. -0.55 ruf. -0.65 dom. +0.13 bre. -0.01 |
HIS | chainID: A, resSeq: 372, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 464.0 Å3 d(Fe-oop): 0.019 Å |
HIS | chainID: A, resSeq: 415, molecule: Eight-heme nitrite reductase |
|||
3ttb-A-1002 |
sad. -0.21 ruf. -0.45 dom. -0.01 bre. -0.18 |
HIS | chainID: A, resSeq: 39, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 340.0 Å3 d(Fe-oop): 0.006 Å |
HIS | chainID: A, resSeq: 234, molecule: Eight-heme nitrite reductase |
|||
3ttb-A-1003 |
sad. +0.20 ruf. -0.28 dom. -0.06 bre. +0.00 |
HIS | chainID: A, resSeq: 30, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 495.0 Å3 d(Fe-oop): 0.054 Å |
HIS | chainID: A, resSeq: 70, molecule: Eight-heme nitrite reductase |
|||
3ttb-A-1001 |
sad. +0.01 ruf. -0.25 dom. -0.10 bre. -0.29 |
HIS | chainID: A, resSeq: 18, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 388.0 Å3 d(Fe-oop): 0.016 Å |
HIS | chainID: A, resSeq: 44, molecule: Eight-heme nitrite reductase |
|||
3ttb-B-1004 |
sad. +0.59 ruf. -0.58 dom. +0.15 bre. +0.05 |
LYS | chainID: B, resSeq: 188, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 366.0 Å3 d(Fe-oop): 0.043 Å |
SO3 | chainID: B, resSeq: 526, molecule: SULFITE ION |
|||
3ttb-B-1005 |
sad. +0.94 ruf. -0.41 dom. +0.11 bre. +0.12 |
HIS | chainID: B, resSeq: 231, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 467.0 Å3 d(Fe-oop): 0.046 Å |
HIS | chainID: B, resSeq: 398, molecule: Eight-heme nitrite reductase |
|||
3ttb-B-1006 |
sad. -0.18 ruf. -0.83 dom. +0.22 bre. +0.01 |
HIS | chainID: B, resSeq: 119, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 391.0 Å3 d(Fe-oop): 0.063 Å |
HIS | chainID: B, resSeq: 300, molecule: Eight-heme nitrite reductase |
|||
3ttb-B-1007 |
sad. +0.68 ruf. -0.46 dom. -0.09 bre. +0.04 |
HIS | chainID: B, resSeq: 383, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 406.0 Å3 d(Fe-oop): 0.069 Å |
HIS | chainID: B, resSeq: 491, molecule: Eight-heme nitrite reductase |
|||
3ttb-B-1008 |
sad. -0.46 ruf. -0.78 dom. +0.16 bre. -0.05 |
HIS | chainID: B, resSeq: 372, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 454.0 Å3 d(Fe-oop): 0.034 Å |
HIS | chainID: B, resSeq: 415, molecule: Eight-heme nitrite reductase |
|||
3ttb-B-1002 |
sad. -0.14 ruf. -0.41 dom. -0.04 bre. -0.23 |
HIS | chainID: B, resSeq: 39, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 347.0 Å3 d(Fe-oop): 0.089 Å |
HIS | chainID: B, resSeq: 234, molecule: Eight-heme nitrite reductase |
|||
3ttb-B-1001 |
sad. +0.09 ruf. -0.30 dom. -0.10 bre. -0.23 |
HIS | chainID: B, resSeq: 18, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 431.0 Å3 d(Fe-oop): 0.016 Å |
HIS | chainID: B, resSeq: 44, molecule: Eight-heme nitrite reductase |