Browser

PyDISH No: 07336

PDB: 3ttb,
chainID: A, resSeq: 1003
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.0 Å

axial ligand #1: HIS

chainID: A,
resSeq: 30,
Coordination distance[Å]: 1.931
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio paradoxus

axial ligand #2: HIS

chainID: A,
resSeq: 70,
Coordination distance[Å]: 1.925
molecule: same as ligand #1

List of other hemes in pdb:3ttb

ID of heme Distortion Axial ligands on heme Function & structure
3ttb-A-1004
sad. +0.66
ruf. -0.49
dom. +0.09
bre. +0.03
LYS chainID: A,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 387.0 Å3
d(Fe-oop): 0.019 Å
SO3 chainID: A, resSeq: 526,
molecule: SULFITE ION
3ttb-A-1005
sad. +0.99
ruf. -0.46
dom. +0.10
bre. +0.04
HIS chainID: A,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 460.0 Å3
d(Fe-oop): 0.019 Å
HIS chainID: A, resSeq: 398,
molecule: Eight-heme nitrite reductase
3ttb-A-1006
sad. -0.20
ruf. -0.85
dom. +0.13
bre. -0.01
HIS chainID: A,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 366.0 Å3
d(Fe-oop): 0.002 Å
HIS chainID: A, resSeq: 300,
molecule: Eight-heme nitrite reductase
3ttb-A-1007
sad. +0.66
ruf. -0.57
dom. -0.12
bre. +0.03
HIS chainID: A,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 417.0 Å3
d(Fe-oop): 0.074 Å
HIS chainID: A, resSeq: 491,
molecule: Eight-heme nitrite reductase
3ttb-A-1008
sad. -0.55
ruf. -0.65
dom. +0.13
bre. -0.01
HIS chainID: A,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 464.0 Å3
d(Fe-oop): 0.019 Å
HIS chainID: A, resSeq: 415,
molecule: Eight-heme nitrite reductase
3ttb-A-1002
sad. -0.21
ruf. -0.45
dom. -0.01
bre. -0.18
HIS chainID: A,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 340.0 Å3
d(Fe-oop): 0.006 Å
HIS chainID: A, resSeq: 234,
molecule: Eight-heme nitrite reductase
3ttb-A-1001
sad. +0.01
ruf. -0.25
dom. -0.10
bre. -0.29
HIS chainID: A,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 388.0 Å3
d(Fe-oop): 0.016 Å
HIS chainID: A, resSeq: 44,
molecule: Eight-heme nitrite reductase
3ttb-B-1004
sad. +0.59
ruf. -0.58
dom. +0.15
bre. +0.05
LYS chainID: B,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 366.0 Å3
d(Fe-oop): 0.043 Å
SO3 chainID: B, resSeq: 526,
molecule: SULFITE ION
3ttb-B-1005
sad. +0.94
ruf. -0.41
dom. +0.11
bre. +0.12
HIS chainID: B,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 467.0 Å3
d(Fe-oop): 0.046 Å
HIS chainID: B, resSeq: 398,
molecule: Eight-heme nitrite reductase
3ttb-B-1006
sad. -0.18
ruf. -0.83
dom. +0.22
bre. +0.01
HIS chainID: B,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 391.0 Å3
d(Fe-oop): 0.063 Å
HIS chainID: B, resSeq: 300,
molecule: Eight-heme nitrite reductase
3ttb-B-1007
sad. +0.68
ruf. -0.46
dom. -0.09
bre. +0.04
HIS chainID: B,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 406.0 Å3
d(Fe-oop): 0.069 Å
HIS chainID: B, resSeq: 491,
molecule: Eight-heme nitrite reductase
3ttb-B-1008
sad. -0.46
ruf. -0.78
dom. +0.16
bre. -0.05
HIS chainID: B,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 454.0 Å3
d(Fe-oop): 0.034 Å
HIS chainID: B, resSeq: 415,
molecule: Eight-heme nitrite reductase
3ttb-B-1002
sad. -0.14
ruf. -0.41
dom. -0.04
bre. -0.23
HIS chainID: B,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 347.0 Å3
d(Fe-oop): 0.089 Å
HIS chainID: B, resSeq: 234,
molecule: Eight-heme nitrite reductase
3ttb-B-1003
sad. +0.32
ruf. -0.32
dom. +0.04
bre. +0.06
HIS chainID: B,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 501.0 Å3
d(Fe-oop): 0.048 Å
HIS chainID: B, resSeq: 70,
molecule: Eight-heme nitrite reductase
3ttb-B-1001
sad. +0.09
ruf. -0.30
dom. -0.10
bre. -0.23
HIS chainID: B,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 431.0 Å3
d(Fe-oop): 0.016 Å
HIS chainID: B, resSeq: 44,
molecule: Eight-heme nitrite reductase