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PyDISH No: 07205

PDB: 3sxq,
chainID: B, resSeq: 1005
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.9 Å

axial ligand #1: HIS

chainID: B,
resSeq: 231,
Coordination distance[Å]: 1.961
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio paradoxus

axial ligand #2: HIS

chainID: B,
resSeq: 398,
Coordination distance[Å]: 1.958
molecule: same as ligand #1

List of other hemes in pdb:3sxq

ID of heme Distortion Axial ligands on heme Function & structure
3sxq-A-1004
sad. +0.54
ruf. -0.41
dom. +0.14
bre. -0.21
LYS chainID: A,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 417.0 Å3
d(Fe-oop): 0.057 Å
HOH chainID: A, resSeq: 793,
molecule: water
3sxq-A-1005
sad. +1.02
ruf. -0.42
dom. +0.06
bre. -0.08
HIS chainID: A,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 498.0 Å3
d(Fe-oop): 0.053 Å
HIS chainID: A, resSeq: 398,
molecule: Eight-heme nitrite reductase
3sxq-A-1006
sad. -0.14
ruf. -0.87
dom. +0.19
bre. -0.21
HIS chainID: A,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 408.0 Å3
d(Fe-oop): 0.038 Å
HIS chainID: A, resSeq: 300,
molecule: Eight-heme nitrite reductase
3sxq-A-1007
sad. +0.73
ruf. -0.64
dom. -0.13
bre. -0.06
HIS chainID: A,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 433.0 Å3
d(Fe-oop): 0.068 Å
HIS chainID: A, resSeq: 491,
molecule: Eight-heme nitrite reductase
3sxq-A-1008
sad. -0.48
ruf. -0.84
dom. +0.14
bre. -0.11
HIS chainID: A,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 571.0 Å3
d(Fe-oop): 0.026 Å
HIS chainID: A, resSeq: 415,
molecule: Eight-heme nitrite reductase
3sxq-A-1002
sad. -0.21
ruf. -0.39
dom. +0.00
bre. -0.36
HIS chainID: A,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 386.0 Å3
d(Fe-oop): 0.017 Å
HIS chainID: A, resSeq: 234,
molecule: Eight-heme nitrite reductase
3sxq-A-1003
sad. +0.21
ruf. -0.33
dom. +0.04
bre. -0.07
HIS chainID: A,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 536.0 Å3
d(Fe-oop): 0.020 Å
HIS chainID: A, resSeq: 70,
molecule: Eight-heme nitrite reductase
3sxq-A-1001
sad. -0.01
ruf. -0.33
dom. -0.08
bre. -0.33
HIS chainID: A,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 413.0 Å3
d(Fe-oop): 0.065 Å
HIS chainID: A, resSeq: 44,
molecule: Eight-heme nitrite reductase
3sxq-B-1004
sad. +0.56
ruf. -0.43
dom. +0.15
bre. -0.24
LYS chainID: B,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 382.0 Å3
d(Fe-oop): 0.043 Å
HOH chainID: B, resSeq: 795,
molecule: water
3sxq-B-1006
sad. -0.12
ruf. -0.90
dom. +0.19
bre. -0.19
HIS chainID: B,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 413.0 Å3
d(Fe-oop): 0.030 Å
HIS chainID: B, resSeq: 300,
molecule: Eight-heme nitrite reductase
3sxq-B-1007
sad. +0.72
ruf. -0.61
dom. -0.11
bre. -0.13
HIS chainID: B,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 448.0 Å3
d(Fe-oop): 0.055 Å
HIS chainID: B, resSeq: 491,
molecule: Eight-heme nitrite reductase
3sxq-B-1008
sad. -0.44
ruf. -0.89
dom. +0.13
bre. -0.10
HIS chainID: B,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 586.0 Å3
d(Fe-oop): 0.029 Å
HIS chainID: B, resSeq: 415,
molecule: Eight-heme nitrite reductase
3sxq-B-1002
sad. -0.20
ruf. -0.44
dom. +0.02
bre. -0.31
HIS chainID: B,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 376.0 Å3
d(Fe-oop): 0.045 Å
HIS chainID: B, resSeq: 234,
molecule: Eight-heme nitrite reductase
3sxq-B-1003
sad. +0.30
ruf. -0.32
dom. -0.01
bre. -0.15
HIS chainID: B,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 548.0 Å3
d(Fe-oop): 0.039 Å
HIS chainID: B, resSeq: 70,
molecule: Eight-heme nitrite reductase
3sxq-B-1001
sad. +0.07
ruf. -0.24
dom. -0.04
bre. -0.35
HIS chainID: B,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 442.0 Å3
d(Fe-oop): 0.032 Å
HIS chainID: B, resSeq: 44,
molecule: Eight-heme nitrite reductase