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PyDISH No: 07123

PDB: 3s7w,
chainID: B, resSeq: 1005
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.79 Å

axial ligand #1: HIS

chainID: B,
resSeq: 231,
Coordination distance[Å]: 1.99
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: B,
resSeq: 398,
Coordination distance[Å]: 1.97
molecule: same as ligand #1

List of other hemes in pdb:3s7w

ID of heme	Distortion	Axial ligands on heme		Function & structure
3s7w-A-1004	`sad. +0.57 ruf. -0.52 dom. +0.09 bre. -0.23`	LYS	chainID: A, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 425.0 Å³ d(Fe-oop): 0.076 Å
3s7w-A-1004	`sad. +0.57 ruf. -0.52 dom. +0.09 bre. -0.23`	NO2	chainID: A, resSeq: 1, molecule: NITRITE ION
3s7w-A-1005	`sad. +1.11 ruf. -0.29 dom. +0.00 bre. -0.16`	HIS	chainID: A, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 497.0 Å³ d(Fe-oop): 0.078 Å
3s7w-A-1005	`sad. +1.11 ruf. -0.29 dom. +0.00 bre. -0.16`	HIS	chainID: A, resSeq: 398, molecule: Eight-heme nitrite reductase
3s7w-A-1006	`sad. -0.20 ruf. -0.72 dom. +0.25 bre. -0.22`	HIS	chainID: A, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 435.0 Å³ d(Fe-oop): 0.010 Å
3s7w-A-1006	`sad. -0.20 ruf. -0.72 dom. +0.25 bre. -0.22`	HIS	chainID: A, resSeq: 300, molecule: Eight-heme nitrite reductase
3s7w-A-1007	`sad. +0.79 ruf. -0.53 dom. -0.09 bre. -0.15`	HIS	chainID: A, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 440.0 Å³ d(Fe-oop): 0.060 Å
3s7w-A-1007	`sad. +0.79 ruf. -0.53 dom. -0.09 bre. -0.15`	HIS	chainID: A, resSeq: 491, molecule: Eight-heme nitrite reductase
3s7w-A-1008	`sad. -0.34 ruf. -0.81 dom. +0.23 bre. -0.17`	HIS	chainID: A, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 583.0 Å³ d(Fe-oop): 0.049 Å
3s7w-A-1008	`sad. -0.34 ruf. -0.81 dom. +0.23 bre. -0.17`	HIS	chainID: A, resSeq: 415, molecule: Eight-heme nitrite reductase
3s7w-A-1002	`sad. -0.15 ruf. -0.41 dom. +0.04 bre. -0.30`	HIS	chainID: A, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 369.0 Å³ d(Fe-oop): 0.064 Å
3s7w-A-1002	`sad. -0.15 ruf. -0.41 dom. +0.04 bre. -0.30`	HIS	chainID: A, resSeq: 234, molecule: Eight-heme nitrite reductase
3s7w-A-1003	`sad. +0.39 ruf. -0.41 dom. +0.04 bre. -0.24`	HIS	chainID: A, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 535.0 Å³ d(Fe-oop): 0.026 Å
3s7w-A-1003	`sad. +0.39 ruf. -0.41 dom. +0.04 bre. -0.24`	HIS	chainID: A, resSeq: 70, molecule: Eight-heme nitrite reductase
3s7w-A-1001	`sad. -0.11 ruf. -0.30 dom. -0.08 bre. -0.37`	HIS	chainID: A, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 427.0 Å³ d(Fe-oop): 0.016 Å
3s7w-A-1001	`sad. -0.11 ruf. -0.30 dom. -0.08 bre. -0.37`	HIS	chainID: A, resSeq: 44, molecule: Eight-heme nitrite reductase
3s7w-B-1004	`sad. +0.61 ruf. -0.44 dom. +0.07 bre. -0.26`	LYS	chainID: B, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 448.0 Å³ d(Fe-oop): 0.067 Å
3s7w-B-1004	`sad. +0.61 ruf. -0.44 dom. +0.07 bre. -0.26`	NO2	chainID: B, resSeq: 1, molecule: NITRITE ION
3s7w-B-1006	`sad. -0.16 ruf. -0.73 dom. +0.27 bre. -0.16`	HIS	chainID: B, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 431.0 Å³ d(Fe-oop): 0.039 Å
3s7w-B-1006	`sad. -0.16 ruf. -0.73 dom. +0.27 bre. -0.16`	HIS	chainID: B, resSeq: 300, molecule: Eight-heme nitrite reductase
3s7w-B-1008	`sad. -0.32 ruf. -0.77 dom. +0.23 bre. -0.16`	HIS	chainID: B, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 576.0 Å³ d(Fe-oop): 0.084 Å
3s7w-B-1008	`sad. -0.32 ruf. -0.77 dom. +0.23 bre. -0.16`	HIS	chainID: B, resSeq: 415, molecule: Eight-heme nitrite reductase
3s7w-B-1002	`sad. -0.12 ruf. -0.40 dom. +0.02 bre. -0.27`	HIS	chainID: B, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 368.0 Å³ d(Fe-oop): 0.045 Å
3s7w-B-1002	`sad. -0.12 ruf. -0.40 dom. +0.02 bre. -0.27`	HIS	chainID: B, resSeq: 234, molecule: Eight-heme nitrite reductase
3s7w-B-1003	`sad. +0.39 ruf. -0.53 dom. +0.04 bre. -0.22`	HIS	chainID: B, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 518.0 Å³ d(Fe-oop): 0.044 Å
3s7w-B-1003	`sad. +0.39 ruf. -0.53 dom. +0.04 bre. -0.22`	HIS	chainID: B, resSeq: 70, molecule: Eight-heme nitrite reductase
3s7w-B-1001	`sad. +0.05 ruf. -0.30 dom. -0.04 bre. -0.33`	HIS	chainID: B, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 457.0 Å³ d(Fe-oop): 0.036 Å
3s7w-B-1001	`sad. +0.05 ruf. -0.30 dom. -0.04 bre. -0.33`	HIS	chainID: B, resSeq: 44, molecule: Eight-heme nitrite reductase