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PyDISH No: 06814

PDB: 3pmq,
chainID: A, resSeq: 678
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 3.2 Å

axial ligand #1: HIS

chainID: A,
resSeq: 590,
Coordination distance[Å]: 2.107
molecule: Decaheme cytochrome c MtrF
Organism: Shewanella oneidensis

axial ligand #2: HIS

chainID: A,
resSeq: 636,
Coordination distance[Å]: 2.102
molecule: same as ligand #1

List of other hemes in pdb:3pmq

ID of heme	Distortion	Axial ligands on heme		Function & structure
3pmq-A-670	`sad. +0.46 ruf. -0.23 dom. +0.09 bre. -0.24`	HIS	chainID: A, resSeq: 198, molecule: Decaheme cytochrome c MtrF	electron transporter oligomeric count: 1 pocket vol.: 494.0 Å³ d(Fe-oop): 0.029 Å
3pmq-A-670	`sad. +0.46 ruf. -0.23 dom. +0.09 bre. -0.24`	HIS	chainID: A, resSeq: 238, molecule: Decaheme cytochrome c MtrF
3pmq-A-671	`sad. -0.48 ruf. -0.03 dom. -0.19 bre. -0.26`	HIS	chainID: A, resSeq: 204, molecule: Decaheme cytochrome c MtrF	electron transporter oligomeric count: 1 pocket vol.: 488.0 Å³ d(Fe-oop): 0.018 Å
3pmq-A-671	`sad. -0.48 ruf. -0.03 dom. -0.19 bre. -0.26`	HIS	chainID: A, resSeq: 218, molecule: Decaheme cytochrome c MtrF
3pmq-A-672	`sad. -0.52 ruf. -0.41 dom. -0.04 bre. -0.22`	HIS	chainID: A, resSeq: 235, molecule: Decaheme cytochrome c MtrF	electron transporter oligomeric count: 1 pocket vol.: 384.0 Å³ d(Fe-oop): 0.104 Å
3pmq-A-672	`sad. -0.52 ruf. -0.41 dom. -0.04 bre. -0.22`	HIS	chainID: A, resSeq: 253, molecule: Decaheme cytochrome c MtrF
3pmq-A-673	`sad. +0.49 ruf. -0.08 dom. +0.09 bre. -0.26`	HIS	chainID: A, resSeq: 278, molecule: Decaheme cytochrome c MtrF	electron transporter oligomeric count: 1 pocket vol.: 623.0 Å³ d(Fe-oop): 0.063 Å
3pmq-A-673	`sad. +0.49 ruf. -0.08 dom. +0.09 bre. -0.26`	HIS	chainID: A, resSeq: 311, molecule: Decaheme cytochrome c MtrF
3pmq-A-674	`sad. +0.13 ruf. -0.96 dom. +0.13 bre. -0.15`	HIS	chainID: A, resSeq: 289, molecule: Decaheme cytochrome c MtrF	electron transporter oligomeric count: 1 pocket vol.: 560.0 Å³ d(Fe-oop): 0.204 Å
3pmq-A-674	`sad. +0.13 ruf. -0.96 dom. +0.13 bre. -0.15`	HIS	chainID: A, resSeq: 302, molecule: Decaheme cytochrome c MtrF
3pmq-A-675	`sad. -0.10 ruf. +0.03 dom. -0.23 bre. -0.26`	HIS	chainID: A, resSeq: 477, molecule: Decaheme cytochrome c MtrF	electron transporter oligomeric count: 1 pocket vol.: 482.0 Å³ d(Fe-oop): 0.043 Å
3pmq-A-675	`sad. -0.10 ruf. +0.03 dom. -0.23 bre. -0.26`	HIS	chainID: A, resSeq: 527, molecule: Decaheme cytochrome c MtrF
3pmq-A-676	`sad. -0.36 ruf. -0.34 dom. -0.01 bre. -0.24`	HIS	chainID: A, resSeq: 485, molecule: Decaheme cytochrome c MtrF	electron transporter oligomeric count: 1 pocket vol.: 538.0 Å³ d(Fe-oop): 0.125 Å
3pmq-A-676	`sad. -0.36 ruf. -0.34 dom. -0.01 bre. -0.24`	HIS	chainID: A, resSeq: 499, molecule: Decaheme cytochrome c MtrF
3pmq-A-677	`sad. -0.12 ruf. -0.29 dom. -0.18 bre. -0.20`	HIS	chainID: A, resSeq: 524, molecule: Decaheme cytochrome c MtrF	electron transporter oligomeric count: 1 pocket vol.: 413.0 Å³ d(Fe-oop): 0.010 Å
3pmq-A-677	`sad. -0.12 ruf. -0.29 dom. -0.18 bre. -0.20`	HIS	chainID: A, resSeq: 550, molecule: Decaheme cytochrome c MtrF
3pmq-A-679	`sad. -0.58 ruf. -0.97 dom. +0.22 bre. -0.15`	HIS	chainID: A, resSeq: 598, molecule: Decaheme cytochrome c MtrF	electron transporter oligomeric count: 1 pocket vol.: 660.0 Å³ d(Fe-oop): 0.019 Å
3pmq-A-679	`sad. -0.58 ruf. -0.97 dom. +0.22 bre. -0.15`	HIS	chainID: A, resSeq: 624, molecule: Decaheme cytochrome c MtrF