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PyDISH No: 06726

PDB: 3owm,
chainID: A, resSeq: 1002
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.65 Å

axial ligand #1: HIS

chainID: A,
resSeq: 39,
Coordination distance[Å]: 1.959
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: A,
resSeq: 234,
Coordination distance[Å]: 1.928
molecule: same as ligand #1

List of other hemes in pdb:3owm

ID of heme Distortion Axial ligands on heme Function & structure
3owm-A-1004
sad. +0.56
ruf. -0.46
dom. +0.13
bre. +0.05
LYS chainID: A,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 396.0 Å3
d(Fe-oop): 0.012 Å
NO2 chainID: A, resSeq: 1,
molecule: NITRITE ION
3owm-A-1005
sad. +1.12
ruf. -0.30
dom. -0.03
bre. +0.09
HIS chainID: A,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 470.0 Å3
d(Fe-oop): 0.021 Å
HIS chainID: A, resSeq: 398,
molecule: Eight-heme nitrite reductase
3owm-A-1006
sad. -0.20
ruf. -0.73
dom. +0.21
bre. +0.05
HIS chainID: A,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 398.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: A, resSeq: 300,
molecule: Eight-heme nitrite reductase
3owm-A-1007
sad. +0.74
ruf. -0.63
dom. -0.13
bre. +0.08
HIS chainID: A,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 422.0 Å3
d(Fe-oop): 0.022 Å
HIS chainID: A, resSeq: 491,
molecule: Eight-heme nitrite reductase
3owm-A-1008
sad. -0.41
ruf. -0.75
dom. +0.13
bre. +0.02
HIS chainID: A,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 543.0 Å3
d(Fe-oop): 0.033 Å
HIS chainID: A, resSeq: 415,
molecule: Eight-heme nitrite reductase
3owm-A-1003
sad. +0.39
ruf. -0.55
dom. +0.04
bre. +0.04
HIS chainID: A,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 509.0 Å3
d(Fe-oop): 0.042 Å
HIS chainID: A, resSeq: 70,
molecule: Eight-heme nitrite reductase
3owm-A-1001
sad. +0.09
ruf. -0.37
dom. -0.03
bre. -0.04
HIS chainID: A,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 408.0 Å3
d(Fe-oop): 0.052 Å
HIS chainID: A, resSeq: 44,
molecule: Eight-heme nitrite reductase
3owm-B-1004
sad. +0.57
ruf. -0.48
dom. +0.15
bre. +0.06
LYS chainID: B,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 394.0 Å3
d(Fe-oop): 0.013 Å
NO2 chainID: B, resSeq: 1,
molecule: NITRITE ION
3owm-B-1005
sad. +1.15
ruf. -0.32
dom. -0.01
bre. +0.09
HIS chainID: B,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 463.0 Å3
d(Fe-oop): 0.020 Å
HIS chainID: B, resSeq: 398,
molecule: Eight-heme nitrite reductase
3owm-B-1006
sad. -0.19
ruf. -0.75
dom. +0.20
bre. +0.06
HIS chainID: B,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 399.0 Å3
d(Fe-oop): 0.010 Å
HIS chainID: B, resSeq: 300,
molecule: Eight-heme nitrite reductase
3owm-B-1007
sad. +0.77
ruf. -0.63
dom. -0.13
bre. +0.12
HIS chainID: B,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 449.0 Å3
d(Fe-oop): 0.027 Å
HIS chainID: B, resSeq: 491,
molecule: Eight-heme nitrite reductase
3owm-B-1008
sad. -0.35
ruf. -0.76
dom. +0.12
bre. +0.03
HIS chainID: B,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 528.0 Å3
d(Fe-oop): 0.027 Å
HIS chainID: B, resSeq: 415,
molecule: Eight-heme nitrite reductase
3owm-B-1002
sad. -0.11
ruf. -0.43
dom. +0.00
bre. -0.00
HIS chainID: B,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 355.0 Å3
d(Fe-oop): 0.042 Å
HIS chainID: B, resSeq: 234,
molecule: Eight-heme nitrite reductase
3owm-B-1003
sad. +0.34
ruf. -0.50
dom. +0.02
bre. +0.03
HIS chainID: B,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 510.0 Å3
d(Fe-oop): 0.024 Å
HIS chainID: B, resSeq: 70,
molecule: Eight-heme nitrite reductase
3owm-B-1001
sad. -0.18
ruf. -0.31
dom. -0.07
bre. -0.10
HIS chainID: B,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 407.0 Å3
d(Fe-oop): 0.040 Å
HIS chainID: B, resSeq: 44,
molecule: Eight-heme nitrite reductase