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PyDISH No: 06725

PDB: 3owm,
chainID: A, resSeq: 1008
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.65 Å

axial ligand #1: HIS

chainID: A,
resSeq: 372,
Coordination distance[Å]: 1.944
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: A,
resSeq: 415,
Coordination distance[Å]: 1.933
molecule: same as ligand #1

List of other hemes in pdb:3owm

ID of heme	Distortion	Axial ligands on heme		Function & structure
3owm-A-1004	`sad. +0.56 ruf. -0.46 dom. +0.13 bre. +0.05`	LYS	chainID: A, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 396.0 Å³ d(Fe-oop): 0.012 Å
3owm-A-1004	`sad. +0.56 ruf. -0.46 dom. +0.13 bre. +0.05`	NO2	chainID: A, resSeq: 1, molecule: NITRITE ION
3owm-A-1005	`sad. +1.12 ruf. -0.30 dom. -0.03 bre. +0.09`	HIS	chainID: A, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 470.0 Å³ d(Fe-oop): 0.021 Å
3owm-A-1005	`sad. +1.12 ruf. -0.30 dom. -0.03 bre. +0.09`	HIS	chainID: A, resSeq: 398, molecule: Eight-heme nitrite reductase
3owm-A-1006	`sad. -0.20 ruf. -0.73 dom. +0.21 bre. +0.05`	HIS	chainID: A, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 398.0 Å³ d(Fe-oop): 0.001 Å
3owm-A-1006	`sad. -0.20 ruf. -0.73 dom. +0.21 bre. +0.05`	HIS	chainID: A, resSeq: 300, molecule: Eight-heme nitrite reductase
3owm-A-1007	`sad. +0.74 ruf. -0.63 dom. -0.13 bre. +0.08`	HIS	chainID: A, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 422.0 Å³ d(Fe-oop): 0.022 Å
3owm-A-1007	`sad. +0.74 ruf. -0.63 dom. -0.13 bre. +0.08`	HIS	chainID: A, resSeq: 491, molecule: Eight-heme nitrite reductase
3owm-A-1002	`sad. -0.10 ruf. -0.47 dom. -0.00 bre. -0.01`	HIS	chainID: A, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 354.0 Å³ d(Fe-oop): 0.027 Å
3owm-A-1002	`sad. -0.10 ruf. -0.47 dom. -0.00 bre. -0.01`	HIS	chainID: A, resSeq: 234, molecule: Eight-heme nitrite reductase
3owm-A-1003	`sad. +0.39 ruf. -0.55 dom. +0.04 bre. +0.04`	HIS	chainID: A, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 509.0 Å³ d(Fe-oop): 0.042 Å
3owm-A-1003	`sad. +0.39 ruf. -0.55 dom. +0.04 bre. +0.04`	HIS	chainID: A, resSeq: 70, molecule: Eight-heme nitrite reductase
3owm-A-1001	`sad. +0.09 ruf. -0.37 dom. -0.03 bre. -0.04`	HIS	chainID: A, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 408.0 Å³ d(Fe-oop): 0.052 Å
3owm-A-1001	`sad. +0.09 ruf. -0.37 dom. -0.03 bre. -0.04`	HIS	chainID: A, resSeq: 44, molecule: Eight-heme nitrite reductase
3owm-B-1004	`sad. +0.57 ruf. -0.48 dom. +0.15 bre. +0.06`	LYS	chainID: B, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 394.0 Å³ d(Fe-oop): 0.013 Å
3owm-B-1004	`sad. +0.57 ruf. -0.48 dom. +0.15 bre. +0.06`	NO2	chainID: B, resSeq: 1, molecule: NITRITE ION
3owm-B-1005	`sad. +1.15 ruf. -0.32 dom. -0.01 bre. +0.09`	HIS	chainID: B, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 463.0 Å³ d(Fe-oop): 0.020 Å
3owm-B-1005	`sad. +1.15 ruf. -0.32 dom. -0.01 bre. +0.09`	HIS	chainID: B, resSeq: 398, molecule: Eight-heme nitrite reductase
3owm-B-1006	`sad. -0.19 ruf. -0.75 dom. +0.20 bre. +0.06`	HIS	chainID: B, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 399.0 Å³ d(Fe-oop): 0.010 Å
3owm-B-1006	`sad. -0.19 ruf. -0.75 dom. +0.20 bre. +0.06`	HIS	chainID: B, resSeq: 300, molecule: Eight-heme nitrite reductase
3owm-B-1007	`sad. +0.77 ruf. -0.63 dom. -0.13 bre. +0.12`	HIS	chainID: B, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 449.0 Å³ d(Fe-oop): 0.027 Å
3owm-B-1007	`sad. +0.77 ruf. -0.63 dom. -0.13 bre. +0.12`	HIS	chainID: B, resSeq: 491, molecule: Eight-heme nitrite reductase
3owm-B-1008	`sad. -0.35 ruf. -0.76 dom. +0.12 bre. +0.03`	HIS	chainID: B, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 528.0 Å³ d(Fe-oop): 0.027 Å
3owm-B-1008	`sad. -0.35 ruf. -0.76 dom. +0.12 bre. +0.03`	HIS	chainID: B, resSeq: 415, molecule: Eight-heme nitrite reductase
3owm-B-1002	`sad. -0.11 ruf. -0.43 dom. +0.00 bre. -0.00`	HIS	chainID: B, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 355.0 Å³ d(Fe-oop): 0.042 Å
3owm-B-1002	`sad. -0.11 ruf. -0.43 dom. +0.00 bre. -0.00`	HIS	chainID: B, resSeq: 234, molecule: Eight-heme nitrite reductase
3owm-B-1003	`sad. +0.34 ruf. -0.50 dom. +0.02 bre. +0.03`	HIS	chainID: B, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 510.0 Å³ d(Fe-oop): 0.024 Å
3owm-B-1003	`sad. +0.34 ruf. -0.50 dom. +0.02 bre. +0.03`	HIS	chainID: B, resSeq: 70, molecule: Eight-heme nitrite reductase
3owm-B-1001	`sad. -0.18 ruf. -0.31 dom. -0.07 bre. -0.10`	HIS	chainID: B, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 407.0 Å³ d(Fe-oop): 0.040 Å
3owm-B-1001	`sad. -0.18 ruf. -0.31 dom. -0.07 bre. -0.10`	HIS	chainID: B, resSeq: 44, molecule: Eight-heme nitrite reductase