Browser

PyDISH No: 06684

PDB: 3omn,
chainID: C, resSeq: 1
heme type: A

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.15 Å

axial ligand #1: HIS

chainID: C,
resSeq: 102,
Coordination distance[Å]: 2.111
molecule: Cytochrome c oxidase, aa3 type, subunit I
EC number: 1.9.3.1
Organism: Rhodobacter sphaeroides 2.4.1

axial ligand #2: HIS

chainID: C,
resSeq: 421,
Coordination distance[Å]: 2.079
molecule: same as ligand #1

List of other hemes in pdb:3omn

ID of heme Distortion Axial ligands on heme Function & structure
3omn-A-1
sad. -0.67
ruf. +0.28
dom. +0.21
bre. -0.28
HIS chainID: A,
resSeq: 102,
molecule: Cytochrome c oxidase, aa3 type, subunit I
oxidoreductase
oligomeric count: 2
pocket vol.: 572.0 Å3
d(Fe-oop): 0.015 Å
HIS chainID: A, resSeq: 421,
molecule: Cytochrome c oxidase, aa3 type, subunit I
3omn-A-2
sad. -0.50
ruf. +0.52
dom. +0.58
bre. -0.30
HIS chainID: A,
resSeq: 419,
molecule: Cytochrome c oxidase, aa3 type, subunit I
oxidoreductase
oligomeric count: 2
pocket vol.: 713.0 Å3
d(Fe-oop): 0.335 Å
HOH chainID: A, resSeq: 701,
molecule: water
3omn-C-2
sad. -0.42
ruf. +0.51
dom. +0.66
bre. -0.30
HIS chainID: C,
resSeq: 419,
molecule: Cytochrome c oxidase, aa3 type, subunit I
oxidoreductase
oligomeric count: 2
pocket vol.: 770.0 Å3
d(Fe-oop): 0.328 Å
HOH chainID: C, resSeq: 701,
molecule: water