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PyDISH No: 06670

PDB: 3om3,
chainID: A, resSeq: 1
heme type: A

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.6 Å

axial ligand #1: HIS

chainID: A,
resSeq: 102,
Coordination distance[Å]: 1.962
molecule: Cytochrome c oxidase, aa3 type, subunit I
EC number: 1.9.3.1
Organism: Rhodobacter sphaeroides 2.4.1

axial ligand #2: HIS

chainID: A,
resSeq: 421,
Coordination distance[Å]: 2.157
molecule: same as ligand #1

List of other hemes in pdb:3om3

ID of heme Distortion Axial ligands on heme Function & structure
3om3-A-2
sad. -0.61
ruf. +0.50
dom. +0.55
bre. -0.29
HIS chainID: A,
resSeq: 419,
molecule: Cytochrome c oxidase, aa3 type, subunit I
oxidoreductase
oligomeric count: 2
pocket vol.: 714.0 Å3
d(Fe-oop): 0.473 Å
Not assigned.
3om3-C-1
sad. -0.62
ruf. +0.35
dom. +0.25
bre. -0.21
HIS chainID: C,
resSeq: 102,
molecule: Cytochrome c oxidase, aa3 type, subunit I
oxidoreductase
oligomeric count: 2
pocket vol.: 604.0 Å3
d(Fe-oop): 0.093 Å
HIS chainID: C, resSeq: 421,
molecule: Cytochrome c oxidase, aa3 type, subunit I
3om3-C-2
sad. -0.63
ruf. +0.37
dom. +0.56
bre. -0.28
HIS chainID: C,
resSeq: 419,
molecule: Cytochrome c oxidase, aa3 type, subunit I
oxidoreductase
oligomeric count: 2
pocket vol.: 746.0 Å3
d(Fe-oop): 0.422 Å
Not assigned.