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PyDISH No: 06649

PDB: 3ocd,
chainID: D, resSeq: 401
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 2.25 Å

axial ligand #1: HIS

chainID: D,
resSeq: 129,
Coordination distance[Å]: 2.062
molecule: SoxX
Organism: Starkeya novella

axial ligand #2: MET

chainID: D,
resSeq: 178,
Coordination distance[Å]: 2.614
molecule: same as ligand #1

List of other hemes in pdb:3ocd

ID of heme Distortion Axial ligands on heme Function & structure
3ocd-A-401
sad. +0.19
ruf. -0.87
dom. +0.56
bre. -0.19
HIS chainID: A,
resSeq: 187,
molecule: SoxA
transferase
oligomeric count: 2
pocket vol.: 490.0 Å3
d(Fe-oop): 0.116 Å
MET chainID: A, resSeq: 236,
molecule: SoxA
3ocd-B-401
sad. +0.06
ruf. -0.61
dom. +0.04
bre. -0.31
HIS chainID: B,
resSeq: 129,
molecule: SoxX
electron transporter
oligomeric count: 2
pocket vol.: 418.0 Å3
d(Fe-oop): 0.054 Å
MET chainID: B, resSeq: 178,
molecule: SoxX
3ocd-C-401
sad. +0.64
ruf. -0.20
dom. +0.07
bre. -0.23
HIS chainID: C,
resSeq: 187,
molecule: SoxA
transferase
oligomeric count: 2
pocket vol.: 393.0 Å3
d(Fe-oop): 0.039 Å
MET chainID: C, resSeq: 236,
molecule: SoxA