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PyDISH No: 06529

PDB: 3nmi,
chainID: D, resSeq: 150
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 2.01 Å

axial ligand #1: MET

chainID: D,
resSeq: 7,
Coordination distance[Å]: 2.326
molecule: Soluble cytochrome b562
Organism: Escherichia coli

axial ligand #2: HIS

chainID: D,
resSeq: 102,
Coordination distance[Å]: 1.889
molecule: same as ligand #1

List of other hemes in pdb:3nmi

ID of heme Distortion Axial ligands on heme Function & structure
3nmi-A-150
 sad. +0.02
ruf. -0.18
dom. -0.14
bre. -0.12
 MET chainID: A,
resSeq: 7,
molecule: Soluble cytochrome b562		 electron transporter
oligomeric count: 1
pocket vol.: 464.0 Å3
d(Fe-oop): 0.013 Å
HIS chainID: A, resSeq: 102,
molecule: Soluble cytochrome b562
3nmi-B-150
 sad. +0.01
ruf. -0.30
dom. -0.14
bre. -0.18
 MET chainID: B,
resSeq: 7,
molecule: Soluble cytochrome b562		 electron transporter
oligomeric count: 1
pocket vol.: 435.0 Å3
d(Fe-oop): 0.006 Å
HIS chainID: B, resSeq: 102,
molecule: Soluble cytochrome b562
3nmi-C-150
 sad. +0.10
ruf. -0.35
dom. -0.12
bre. -0.23
 MET chainID: C,
resSeq: 7,
molecule: Soluble cytochrome b562		 electron transporter
oligomeric count: 1
pocket vol.: 394.0 Å3
d(Fe-oop): 0.021 Å
HIS chainID: C, resSeq: 102,
molecule: Soluble cytochrome b562
3nmi-E-150
 sad. +0.04
ruf. -0.22
dom. -0.16
bre. -0.11
 MET chainID: E,
resSeq: 7,
molecule: Soluble cytochrome b562		 electron transporter
oligomeric count: 1
pocket vol.: 399.0 Å3
d(Fe-oop): 0.009 Å
HIS chainID: E, resSeq: 102,
molecule: Soluble cytochrome b562
3nmi-F-150
 sad. +0.05
ruf. -0.36
dom. -0.19
bre. -0.16
 MET chainID: F,
resSeq: 7,
molecule: Soluble cytochrome b562		 electron transporter
oligomeric count: 1
pocket vol.: 425.0 Å3
d(Fe-oop): 0.002 Å
HIS chainID: F, resSeq: 102,
molecule: Soluble cytochrome b562