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PyDISH No: 06458

PDB: 3nbt,
chainID: E, resSeq: 105
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 2.1 Å

axial ligand #1: HIS

chainID: E,
resSeq: 18,
Coordination distance[Å]: 1.956
molecule: Cytochrome c
Organism: Equus caballus

axial ligand #2: HOH

chainID: E,
resSeq: 205,
Coordination distance[Å]: 2.114
molecule: water

List of other hemes in pdb:3nbt

ID of heme Distortion Axial ligands on heme Function & structure
3nbt-A-105
sad. -0.14
ruf. -0.54
dom. -0.09
bre. +0.12
HIS chainID: A,
resSeq: 18,
molecule: Cytochrome c
electron transporter
oligomeric count: 3
pocket vol.: 335.0 Å3
d(Fe-oop): 0.031 Å
HOH chainID: A, resSeq: 201,
molecule: water
3nbt-B-105
sad. -0.17
ruf. -0.69
dom. -0.12
bre. +0.14
HIS chainID: B,
resSeq: 18,
molecule: Cytochrome c
electron transporter
oligomeric count: 3
pocket vol.: 346.0 Å3
d(Fe-oop): 0.017 Å
HOH chainID: B, resSeq: 202,
molecule: water
3nbt-C-105
sad. -0.18
ruf. -0.67
dom. -0.12
bre. +0.19
HIS chainID: C,
resSeq: 18,
molecule: Cytochrome c
electron transporter
oligomeric count: 3
pocket vol.: 320.0 Å3
d(Fe-oop): 0.006 Å
HOH chainID: C, resSeq: 203,
molecule: water
3nbt-D-105
sad. -0.18
ruf. -0.70
dom. -0.15
bre. +0.19
HIS chainID: D,
resSeq: 18,
molecule: Cytochrome c
electron transporter
oligomeric count: 3
pocket vol.: 333.0 Å3
d(Fe-oop): 0.004 Å
HOH chainID: D, resSeq: 204,
molecule: water
3nbt-F-105
sad. -0.20
ruf. -0.62
dom. -0.09
bre. +0.28
HIS chainID: F,
resSeq: 18,
molecule: Cytochrome c
electron transporter
oligomeric count: 3
pocket vol.: 355.0 Å3
d(Fe-oop): 0.020 Å
HOH chainID: F, resSeq: 206,
molecule: water