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PyDISH No: 06333

PDB: 3mmo,
chainID: A, resSeq: 1007
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.55 Å

axial ligand #1: HIS

chainID: A,
resSeq: 383,
Coordination distance[Å]: 1.981
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: A,
resSeq: 491,
Coordination distance[Å]: 1.996
molecule: same as ligand #1

List of other hemes in pdb:3mmo

ID of heme Distortion Axial ligands on heme Function & structure
3mmo-A-1004
sad. +0.54
ruf. -0.52
dom. +0.09
bre. -0.10
LYS chainID: A,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 416.0 Å3
d(Fe-oop): 0.017 Å
CYN chainID: A, resSeq: 526,
molecule: CYANIDE ION
3mmo-A-1005
sad. +1.12
ruf. -0.32
dom. -0.02
bre. -0.05
HIS chainID: A,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 495.0 Å3
d(Fe-oop): 0.016 Å
HIS chainID: A, resSeq: 398,
molecule: Eight-heme nitrite reductase
3mmo-A-1006
sad. -0.21
ruf. -0.75
dom. +0.20
bre. -0.09
HIS chainID: A,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 428.0 Å3
d(Fe-oop): 0.007 Å
HIS chainID: A, resSeq: 300,
molecule: Eight-heme nitrite reductase
3mmo-A-1008
sad. -0.36
ruf. -0.78
dom. +0.12
bre. -0.07
HIS chainID: A,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 548.0 Å3
d(Fe-oop): 0.027 Å
HIS chainID: A, resSeq: 415,
molecule: Eight-heme nitrite reductase
3mmo-A-1002
sad. -0.13
ruf. -0.45
dom. -0.01
bre. -0.10
HIS chainID: A,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 388.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: A, resSeq: 234,
molecule: Eight-heme nitrite reductase
3mmo-A-1003
sad. +0.39
ruf. -0.54
dom. +0.02
bre. -0.10
HIS chainID: A,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 525.0 Å3
d(Fe-oop): 0.034 Å
HIS chainID: A, resSeq: 70,
molecule: Eight-heme nitrite reductase
3mmo-A-1001
sad. +0.07
ruf. -0.34
dom. -0.07
bre. -0.19
HIS chainID: A,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 462.0 Å3
d(Fe-oop): 0.035 Å
HIS chainID: A, resSeq: 44,
molecule: Eight-heme nitrite reductase
3mmo-B-1004
sad. +0.57
ruf. -0.50
dom. +0.09
bre. -0.13
LYS chainID: B,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 401.0 Å3
d(Fe-oop): 0.022 Å
CYN chainID: B, resSeq: 526,
molecule: CYANIDE ION
3mmo-B-1005
sad. +1.15
ruf. -0.32
dom. -0.01
bre. -0.03
HIS chainID: B,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 508.0 Å3
d(Fe-oop): 0.024 Å
HIS chainID: B, resSeq: 398,
molecule: Eight-heme nitrite reductase
3mmo-B-1006
sad. -0.21
ruf. -0.77
dom. +0.20
bre. -0.09
HIS chainID: B,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 413.0 Å3
d(Fe-oop): 0.009 Å
HIS chainID: B, resSeq: 300,
molecule: Eight-heme nitrite reductase
3mmo-B-1007
sad. +0.79
ruf. -0.67
dom. -0.12
bre. -0.05
HIS chainID: B,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 443.0 Å3
d(Fe-oop): 0.028 Å
HIS chainID: B, resSeq: 491,
molecule: Eight-heme nitrite reductase
3mmo-B-1008
sad. -0.35
ruf. -0.78
dom. +0.11
bre. -0.06
HIS chainID: B,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 565.0 Å3
d(Fe-oop): 0.017 Å
HIS chainID: B, resSeq: 415,
molecule: Eight-heme nitrite reductase
3mmo-B-1002
sad. -0.11
ruf. -0.43
dom. -0.01
bre. -0.13
HIS chainID: B,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 364.0 Å3
d(Fe-oop): 0.033 Å
HIS chainID: B, resSeq: 234,
molecule: Eight-heme nitrite reductase
3mmo-B-1003
sad. +0.35
ruf. -0.51
dom. +0.00
bre. -0.09
HIS chainID: B,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 508.0 Å3
d(Fe-oop): 0.016 Å
HIS chainID: B, resSeq: 70,
molecule: Eight-heme nitrite reductase
3mmo-B-1001
sad. -0.14
ruf. -0.27
dom. -0.08
bre. -0.17
HIS chainID: B,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 428.0 Å3
d(Fe-oop): 0.025 Å
HIS chainID: B, resSeq: 44,
molecule: Eight-heme nitrite reductase