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PyDISH No: 06316

PDB: 3mk7,
chainID: K, resSeq: 501
heme type: B

distortion

Protein data

function: translocase
experiment: X-RAY DIFFRACTION
resolution: 3.2 Å

axial ligand #1: HIS

chainID: K,
resSeq: 345,
Coordination distance[Å]: 1.869
molecule: Cytochrome c oxidase, cbb3-type, subunit N
Organism: Pseudomonas stutzeri

axial ligand #2: PEO

chainID: K,
resSeq: 508,
Coordination distance[Å]: 2.147
molecule: HYDROGEN PEROXIDE

List of other hemes in pdb:3mk7

ID of heme Distortion Axial ligands on heme Function & structure
3mk7-A-501
sad. +1.43
ruf. +0.47
dom. +0.11
bre. +0.03
HIS chainID: A,
resSeq: 345,
molecule: Cytochrome c oxidase, cbb3-type, subunit N
translocase
oligomeric count: 4
pocket vol.: 405.0 Å3
d(Fe-oop): 0.005 Å
PEO chainID: A, resSeq: 508,
molecule: HYDROGEN PEROXIDE
3mk7-A-502
sad. +0.34
ruf. +0.25
dom. +0.11
bre. -0.07
HIS chainID: A,
resSeq: 60,
molecule: Cytochrome c oxidase, cbb3-type, subunit N
translocase
oligomeric count: 4
pocket vol.: 363.0 Å3
d(Fe-oop): 0.009 Å
HIS chainID: A, resSeq: 347,
molecule: Cytochrome c oxidase, cbb3-type, subunit N
3mk7-B-211
sad. +0.43
ruf. -0.33
dom. +0.03
bre. +0.07
HIS chainID: B,
resSeq: 69,
molecule: Cytochrome c oxidase, cbb3-type, subunit O
electron transporter
oligomeric count: 4
pocket vol.: 308.0 Å3
d(Fe-oop): 0.003 Å
MET chainID: B, resSeq: 137,
molecule: Cytochrome c oxidase, cbb3-type, subunit O
3mk7-C-321
sad. -0.09
ruf. -0.60
dom. +0.15
bre. +0.02
MET chainID: C,
resSeq: 186,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
electron transporter
oligomeric count: 4
pocket vol.: 281.0 Å3
d(Fe-oop): 0.007 Å
HIS chainID: C, resSeq: 237,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
3mk7-C-322
sad. -0.37
ruf. -0.46
dom. +0.17
bre. +0.05
HIS chainID: C,
resSeq: 147,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
electron transporter
oligomeric count: 4
pocket vol.: 325.0 Å3
d(Fe-oop): 0.011 Å
MET chainID: C, resSeq: 279,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
3mk7-D-501
sad. +1.42
ruf. +0.58
dom. +0.07
bre. -0.04
HIS chainID: D,
resSeq: 345,
molecule: Cytochrome c oxidase, cbb3-type, subunit N
translocase
oligomeric count: 4
pocket vol.: 416.0 Å3
d(Fe-oop): 0.005 Å
PEO chainID: D, resSeq: 508,
molecule: HYDROGEN PEROXIDE
3mk7-D-502
sad. +0.24
ruf. +0.17
dom. +0.06
bre. -0.13
HIS chainID: D,
resSeq: 60,
molecule: Cytochrome c oxidase, cbb3-type, subunit N
translocase
oligomeric count: 4
pocket vol.: 355.0 Å3
d(Fe-oop): 0.014 Å
HIS chainID: D, resSeq: 347,
molecule: Cytochrome c oxidase, cbb3-type, subunit N
3mk7-E-211
sad. +0.41
ruf. -0.34
dom. +0.08
bre. -0.00
HIS chainID: E,
resSeq: 69,
molecule: Cytochrome c oxidase, cbb3-type, subunit O
electron transporter
oligomeric count: 4
pocket vol.: 307.0 Å3
d(Fe-oop): 0.016 Å
MET chainID: E, resSeq: 137,
molecule: Cytochrome c oxidase, cbb3-type, subunit O
3mk7-F-321
sad. -0.04
ruf. -0.61
dom. +0.20
bre. -0.06
MET chainID: F,
resSeq: 186,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
electron transporter
oligomeric count: 4
pocket vol.: 296.0 Å3
d(Fe-oop): 0.002 Å
HIS chainID: F, resSeq: 237,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
3mk7-F-322
sad. -0.26
ruf. -0.44
dom. +0.18
bre. -0.06
HIS chainID: F,
resSeq: 147,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
electron transporter
oligomeric count: 4
pocket vol.: 331.0 Å3
d(Fe-oop): 0.002 Å
MET chainID: F, resSeq: 279,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
3mk7-G-501
sad. +1.43
ruf. +0.57
dom. +0.08
bre. -0.04
HIS chainID: G,
resSeq: 345,
molecule: Cytochrome c oxidase, cbb3-type, subunit N
translocase
oligomeric count: 4
pocket vol.: 427.0 Å3
d(Fe-oop): 0.014 Å
PEO chainID: G, resSeq: 508,
molecule: HYDROGEN PEROXIDE
3mk7-G-502
sad. +0.31
ruf. +0.21
dom. +0.04
bre. -0.08
HIS chainID: G,
resSeq: 60,
molecule: Cytochrome c oxidase, cbb3-type, subunit N
translocase
oligomeric count: 4
pocket vol.: 356.0 Å3
d(Fe-oop): 0.003 Å
HIS chainID: G, resSeq: 347,
molecule: Cytochrome c oxidase, cbb3-type, subunit N
3mk7-H-211
sad. +0.38
ruf. -0.38
dom. +0.03
bre. +0.06
HIS chainID: H,
resSeq: 69,
molecule: Cytochrome c oxidase, cbb3-type, subunit O
electron transporter
oligomeric count: 4
pocket vol.: 321.0 Å3
d(Fe-oop): 0.023 Å
MET chainID: H, resSeq: 137,
molecule: Cytochrome c oxidase, cbb3-type, subunit O
3mk7-I-321
sad. -0.09
ruf. -0.73
dom. +0.20
bre. +0.07
MET chainID: I,
resSeq: 186,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
electron transporter
oligomeric count: 4
pocket vol.: 274.0 Å3
d(Fe-oop): 0.005 Å
HIS chainID: I, resSeq: 237,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
3mk7-I-322
sad. -0.19
ruf. -0.47
dom. +0.12
bre. +0.02
HIS chainID: I,
resSeq: 147,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
electron transporter
oligomeric count: 4
pocket vol.: 334.0 Å3
d(Fe-oop): 0.001 Å
MET chainID: I, resSeq: 279,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
3mk7-K-502
sad. +0.22
ruf. +0.20
dom. +0.10
bre. -0.16
HIS chainID: K,
resSeq: 60,
molecule: Cytochrome c oxidase, cbb3-type, subunit N
translocase
oligomeric count: 4
pocket vol.: 349.0 Å3
d(Fe-oop): 0.004 Å
HIS chainID: K, resSeq: 347,
molecule: Cytochrome c oxidase, cbb3-type, subunit N
3mk7-L-211
sad. +0.36
ruf. -0.32
dom. +0.04
bre. +0.02
HIS chainID: L,
resSeq: 69,
molecule: Cytochrome c oxidase, cbb3-type, subunit O
electron transporter
oligomeric count: 4
pocket vol.: 294.0 Å3
d(Fe-oop): 0.002 Å
MET chainID: L, resSeq: 137,
molecule: Cytochrome c oxidase, cbb3-type, subunit O
3mk7-M-321
sad. -0.05
ruf. -0.63
dom. +0.15
bre. -0.02
MET chainID: M,
resSeq: 186,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
electron transporter
oligomeric count: 4
pocket vol.: 293.0 Å3
d(Fe-oop): 0.012 Å
HIS chainID: M, resSeq: 237,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
3mk7-M-322
sad. -0.31
ruf. -0.45
dom. +0.09
bre. +0.08
HIS chainID: M,
resSeq: 147,
molecule: Cytochrome c oxidase, cbb3-type, subunit P
electron transporter
oligomeric count: 4
pocket vol.: 326.0 Å3
d(Fe-oop): 0.005 Å
MET chainID: M, resSeq: 279,
molecule: Cytochrome c oxidase, cbb3-type, subunit P