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PyDISH No: 06306

PDB: 3mk7,
chainID: D, resSeq: 501
heme type: B

distortion

Protein data

function: translocase
experiment: X-RAY DIFFRACTION
resolution: 3.2 Å

axial ligand #1: HIS

chainID: D,
resSeq: 345,
Coordination distance[Å]: 1.89
molecule: Cytochrome c oxidase, cbb3-type, subunit N
Organism: Pseudomonas stutzeri

axial ligand #2: PEO

chainID: D,
resSeq: 508,
Coordination distance[Å]: 2.063
molecule: HYDROGEN PEROXIDE

List of other hemes in pdb:3mk7

ID of heme	Distortion	Axial ligands on heme		Function & structure
3mk7-A-501	`sad. +1.43 ruf. +0.47 dom. +0.11 bre. +0.03`	HIS	chainID: A, resSeq: 345, molecule: Cytochrome c oxidase, cbb3-type, subunit N	translocase oligomeric count: 4 pocket vol.: 405.0 Å³ d(Fe-oop): 0.005 Å
3mk7-A-501	`sad. +1.43 ruf. +0.47 dom. +0.11 bre. +0.03`	PEO	chainID: A, resSeq: 508, molecule: HYDROGEN PEROXIDE
3mk7-A-502	`sad. +0.34 ruf. +0.25 dom. +0.11 bre. -0.07`	HIS	chainID: A, resSeq: 60, molecule: Cytochrome c oxidase, cbb3-type, subunit N	translocase oligomeric count: 4 pocket vol.: 363.0 Å³ d(Fe-oop): 0.009 Å
3mk7-A-502	`sad. +0.34 ruf. +0.25 dom. +0.11 bre. -0.07`	HIS	chainID: A, resSeq: 347, molecule: Cytochrome c oxidase, cbb3-type, subunit N
3mk7-B-211	`sad. +0.43 ruf. -0.33 dom. +0.03 bre. +0.07`	HIS	chainID: B, resSeq: 69, molecule: Cytochrome c oxidase, cbb3-type, subunit O	electron transporter oligomeric count: 4 pocket vol.: 308.0 Å³ d(Fe-oop): 0.003 Å
3mk7-B-211	`sad. +0.43 ruf. -0.33 dom. +0.03 bre. +0.07`	MET	chainID: B, resSeq: 137, molecule: Cytochrome c oxidase, cbb3-type, subunit O
3mk7-C-321	`sad. -0.09 ruf. -0.60 dom. +0.15 bre. +0.02`	MET	chainID: C, resSeq: 186, molecule: Cytochrome c oxidase, cbb3-type, subunit P	electron transporter oligomeric count: 4 pocket vol.: 281.0 Å³ d(Fe-oop): 0.007 Å
3mk7-C-321	`sad. -0.09 ruf. -0.60 dom. +0.15 bre. +0.02`	HIS	chainID: C, resSeq: 237, molecule: Cytochrome c oxidase, cbb3-type, subunit P
3mk7-C-322	`sad. -0.37 ruf. -0.46 dom. +0.17 bre. +0.05`	HIS	chainID: C, resSeq: 147, molecule: Cytochrome c oxidase, cbb3-type, subunit P	electron transporter oligomeric count: 4 pocket vol.: 325.0 Å³ d(Fe-oop): 0.011 Å
3mk7-C-322	`sad. -0.37 ruf. -0.46 dom. +0.17 bre. +0.05`	MET	chainID: C, resSeq: 279, molecule: Cytochrome c oxidase, cbb3-type, subunit P
3mk7-D-502	`sad. +0.24 ruf. +0.17 dom. +0.06 bre. -0.13`	HIS	chainID: D, resSeq: 60, molecule: Cytochrome c oxidase, cbb3-type, subunit N	translocase oligomeric count: 4 pocket vol.: 355.0 Å³ d(Fe-oop): 0.014 Å
3mk7-D-502	`sad. +0.24 ruf. +0.17 dom. +0.06 bre. -0.13`	HIS	chainID: D, resSeq: 347, molecule: Cytochrome c oxidase, cbb3-type, subunit N
3mk7-E-211	`sad. +0.41 ruf. -0.34 dom. +0.08 bre. -0.00`	HIS	chainID: E, resSeq: 69, molecule: Cytochrome c oxidase, cbb3-type, subunit O	electron transporter oligomeric count: 4 pocket vol.: 307.0 Å³ d(Fe-oop): 0.016 Å
3mk7-E-211	`sad. +0.41 ruf. -0.34 dom. +0.08 bre. -0.00`	MET	chainID: E, resSeq: 137, molecule: Cytochrome c oxidase, cbb3-type, subunit O
3mk7-F-321	`sad. -0.04 ruf. -0.61 dom. +0.20 bre. -0.06`	MET	chainID: F, resSeq: 186, molecule: Cytochrome c oxidase, cbb3-type, subunit P	electron transporter oligomeric count: 4 pocket vol.: 296.0 Å³ d(Fe-oop): 0.002 Å
3mk7-F-321	`sad. -0.04 ruf. -0.61 dom. +0.20 bre. -0.06`	HIS	chainID: F, resSeq: 237, molecule: Cytochrome c oxidase, cbb3-type, subunit P
3mk7-F-322	`sad. -0.26 ruf. -0.44 dom. +0.18 bre. -0.06`	HIS	chainID: F, resSeq: 147, molecule: Cytochrome c oxidase, cbb3-type, subunit P	electron transporter oligomeric count: 4 pocket vol.: 331.0 Å³ d(Fe-oop): 0.002 Å
3mk7-F-322	`sad. -0.26 ruf. -0.44 dom. +0.18 bre. -0.06`	MET	chainID: F, resSeq: 279, molecule: Cytochrome c oxidase, cbb3-type, subunit P
3mk7-G-501	`sad. +1.43 ruf. +0.57 dom. +0.08 bre. -0.04`	HIS	chainID: G, resSeq: 345, molecule: Cytochrome c oxidase, cbb3-type, subunit N	translocase oligomeric count: 4 pocket vol.: 427.0 Å³ d(Fe-oop): 0.014 Å
3mk7-G-501	`sad. +1.43 ruf. +0.57 dom. +0.08 bre. -0.04`	PEO	chainID: G, resSeq: 508, molecule: HYDROGEN PEROXIDE
3mk7-G-502	`sad. +0.31 ruf. +0.21 dom. +0.04 bre. -0.08`	HIS	chainID: G, resSeq: 60, molecule: Cytochrome c oxidase, cbb3-type, subunit N	translocase oligomeric count: 4 pocket vol.: 356.0 Å³ d(Fe-oop): 0.003 Å
3mk7-G-502	`sad. +0.31 ruf. +0.21 dom. +0.04 bre. -0.08`	HIS	chainID: G, resSeq: 347, molecule: Cytochrome c oxidase, cbb3-type, subunit N
3mk7-H-211	`sad. +0.38 ruf. -0.38 dom. +0.03 bre. +0.06`	HIS	chainID: H, resSeq: 69, molecule: Cytochrome c oxidase, cbb3-type, subunit O	electron transporter oligomeric count: 4 pocket vol.: 321.0 Å³ d(Fe-oop): 0.023 Å
3mk7-H-211	`sad. +0.38 ruf. -0.38 dom. +0.03 bre. +0.06`	MET	chainID: H, resSeq: 137, molecule: Cytochrome c oxidase, cbb3-type, subunit O
3mk7-I-321	`sad. -0.09 ruf. -0.73 dom. +0.20 bre. +0.07`	MET	chainID: I, resSeq: 186, molecule: Cytochrome c oxidase, cbb3-type, subunit P	electron transporter oligomeric count: 4 pocket vol.: 274.0 Å³ d(Fe-oop): 0.005 Å
3mk7-I-321	`sad. -0.09 ruf. -0.73 dom. +0.20 bre. +0.07`	HIS	chainID: I, resSeq: 237, molecule: Cytochrome c oxidase, cbb3-type, subunit P
3mk7-I-322	`sad. -0.19 ruf. -0.47 dom. +0.12 bre. +0.02`	HIS	chainID: I, resSeq: 147, molecule: Cytochrome c oxidase, cbb3-type, subunit P	electron transporter oligomeric count: 4 pocket vol.: 334.0 Å³ d(Fe-oop): 0.001 Å
3mk7-I-322	`sad. -0.19 ruf. -0.47 dom. +0.12 bre. +0.02`	MET	chainID: I, resSeq: 279, molecule: Cytochrome c oxidase, cbb3-type, subunit P
3mk7-K-501	`sad. +1.44 ruf. +0.59 dom. +0.08 bre. -0.03`	HIS	chainID: K, resSeq: 345, molecule: Cytochrome c oxidase, cbb3-type, subunit N	translocase oligomeric count: 4 pocket vol.: 415.0 Å³ d(Fe-oop): 0.006 Å
3mk7-K-501	`sad. +1.44 ruf. +0.59 dom. +0.08 bre. -0.03`	PEO	chainID: K, resSeq: 508, molecule: HYDROGEN PEROXIDE
3mk7-K-502	`sad. +0.22 ruf. +0.20 dom. +0.10 bre. -0.16`	HIS	chainID: K, resSeq: 60, molecule: Cytochrome c oxidase, cbb3-type, subunit N	translocase oligomeric count: 4 pocket vol.: 349.0 Å³ d(Fe-oop): 0.004 Å
3mk7-K-502	`sad. +0.22 ruf. +0.20 dom. +0.10 bre. -0.16`	HIS	chainID: K, resSeq: 347, molecule: Cytochrome c oxidase, cbb3-type, subunit N
3mk7-L-211	`sad. +0.36 ruf. -0.32 dom. +0.04 bre. +0.02`	HIS	chainID: L, resSeq: 69, molecule: Cytochrome c oxidase, cbb3-type, subunit O	electron transporter oligomeric count: 4 pocket vol.: 294.0 Å³ d(Fe-oop): 0.002 Å
3mk7-L-211	`sad. +0.36 ruf. -0.32 dom. +0.04 bre. +0.02`	MET	chainID: L, resSeq: 137, molecule: Cytochrome c oxidase, cbb3-type, subunit O
3mk7-M-321	`sad. -0.05 ruf. -0.63 dom. +0.15 bre. -0.02`	MET	chainID: M, resSeq: 186, molecule: Cytochrome c oxidase, cbb3-type, subunit P	electron transporter oligomeric count: 4 pocket vol.: 293.0 Å³ d(Fe-oop): 0.012 Å
3mk7-M-321	`sad. -0.05 ruf. -0.63 dom. +0.15 bre. -0.02`	HIS	chainID: M, resSeq: 237, molecule: Cytochrome c oxidase, cbb3-type, subunit P
3mk7-M-322	`sad. -0.31 ruf. -0.45 dom. +0.09 bre. +0.08`	HIS	chainID: M, resSeq: 147, molecule: Cytochrome c oxidase, cbb3-type, subunit P	electron transporter oligomeric count: 4 pocket vol.: 326.0 Å³ d(Fe-oop): 0.005 Å
3mk7-M-322	`sad. -0.31 ruf. -0.45 dom. +0.09 bre. +0.08`	MET	chainID: M, resSeq: 279, molecule: Cytochrome c oxidase, cbb3-type, subunit P