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PyDISH No: 06132

PDB: 3l72,
chainID: P, resSeq: 502
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 3.06 Å

axial ligand #1: HIS

chainID: P,
resSeq: 98,
Coordination distance[Å]: 2.011
molecule: CYTOCHROME B
EC number: 1.10.2.2
Organism: Gallus gallus

axial ligand #2: HIS

chainID: P,
resSeq: 197,
Coordination distance[Å]: 2.008
molecule: same as ligand #1

List of other hemes in pdb:3l72

ID of heme Distortion Axial ligands on heme Function & structure
3l72-C-501
sad. +0.17
ruf. -0.29
dom. -0.17
bre. +0.11
HIS chainID: C,
resSeq: 84,
molecule: CYTOCHROME B
oxidoreductase
oligomeric count: 20
pocket vol.: 388.0 Å3
d(Fe-oop): 0.031 Å
HIS chainID: C, resSeq: 183,
molecule: CYTOCHROME B
3l72-C-502
sad. -0.80
ruf. -0.29
dom. +0.15
bre. +0.08
HIS chainID: C,
resSeq: 98,
molecule: CYTOCHROME B
oxidoreductase
oligomeric count: 20
pocket vol.: 381.0 Å3
d(Fe-oop): 0.057 Å
HIS chainID: C, resSeq: 197,
molecule: CYTOCHROME B
3l72-D-501
sad. +0.18
ruf. -0.07
dom. -0.10
bre. +0.14
HIS chainID: D,
resSeq: 41,
molecule: MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN
oxidoreductase
oligomeric count: 20
pocket vol.: 452.0 Å3
d(Fe-oop): 0.025 Å
MET chainID: D, resSeq: 160,
molecule: MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN
3l72-P-501
sad. +0.31
ruf. -0.19
dom. -0.22
bre. +0.11
HIS chainID: P,
resSeq: 84,
molecule: CYTOCHROME B
oxidoreductase
oligomeric count: 20
pocket vol.: 400.0 Å3
d(Fe-oop): 0.001 Å
HIS chainID: P, resSeq: 183,
molecule: CYTOCHROME B
3l72-Q-501
sad. +0.11
ruf. +0.01
dom. -0.10
bre. +0.08
HIS chainID: Q,
resSeq: 41,
molecule: MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN
oxidoreductase
oligomeric count: 20
pocket vol.: 434.0 Å3
d(Fe-oop): 0.027 Å
MET chainID: Q, resSeq: 160,
molecule: MITOCHONDRIAL CYTOCHROME C1, HEME PROTEIN