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PyDISH No: 05974

PDB: 3j2t,
chainID: K, resSeq: 500
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 9.5 Å
origomeric count: 14

axial ligand #1: HIS

chainID: K,
resSeq: 18,
Coordination distance[Å]: 2.103
molecule: Cytochrome c
Organism: Bos taurus

axial ligand #2: MET

chainID: K,
resSeq: 80,
Coordination distance[Å]: 2.297
molecule: same as ligand #1

List of other hemes in pdb:3j2t

ID of heme Distortion Axial ligands on heme Function & structure
3j2t-H-500
sad. +0.01
ruf. -0.14
dom. +0.13
bre. -0.05
HIS chainID: H,
resSeq: 18,
molecule: Cytochrome c
electron transporter
oligomeric count: 14
pocket vol.: 336.0 Å3
d(Fe-oop): 0.034 Å
MET chainID: H, resSeq: 80,
molecule: Cytochrome c
3j2t-I-500
sad. +0.01
ruf. -0.14
dom. +0.13
bre. -0.05
HIS chainID: I,
resSeq: 18,
molecule: Cytochrome c
electron transporter
oligomeric count: 14
pocket vol.: 351.0 Å3
d(Fe-oop): 0.034 Å
MET chainID: I, resSeq: 80,
molecule: Cytochrome c
3j2t-J-500
sad. +0.01
ruf. -0.14
dom. +0.13
bre. -0.05
HIS chainID: J,
resSeq: 18,
molecule: Cytochrome c
electron transporter
oligomeric count: 14
pocket vol.: 354.0 Å3
d(Fe-oop): 0.034 Å
MET chainID: J, resSeq: 80,
molecule: Cytochrome c
3j2t-L-500
sad. +0.01
ruf. -0.14
dom. +0.13
bre. -0.05
HIS chainID: L,
resSeq: 18,
molecule: Cytochrome c
electron transporter
oligomeric count: 14
pocket vol.: 340.0 Å3
d(Fe-oop): 0.034 Å
MET chainID: L, resSeq: 80,
molecule: Cytochrome c
3j2t-M-500
sad. +0.01
ruf. -0.14
dom. +0.13
bre. -0.05
HIS chainID: M,
resSeq: 18,
molecule: Cytochrome c
electron transporter
oligomeric count: 14
pocket vol.: 342.0 Å3
d(Fe-oop): 0.034 Å
MET chainID: M, resSeq: 80,
molecule: Cytochrome c
3j2t-N-500
sad. +0.01
ruf. -0.14
dom. +0.13
bre. -0.05
HIS chainID: N,
resSeq: 18,
molecule: Cytochrome c
electron transporter
oligomeric count: 14
pocket vol.: 347.0 Å3
d(Fe-oop): 0.034 Å
MET chainID: N, resSeq: 80,
molecule: Cytochrome c