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PyDISH No: 05724

PDB: 3gm6,
chainID: B, resSeq: 1005
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.8 Å

axial ligand #1: HIS

chainID: B,
resSeq: 231,
Coordination distance[Å]: 1.993
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: B,
resSeq: 398,
Coordination distance[Å]: 1.958
molecule: same as ligand #1

List of other hemes in pdb:3gm6

ID of heme	Distortion	Axial ligands on heme		Function & structure
3gm6-A-1004	`sad. +0.58 ruf. -0.41 dom. +0.10 bre. -0.44`	LYS	chainID: A, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 428.0 Å³ d(Fe-oop): 0.166 Å
3gm6-A-1004	`sad. +0.58 ruf. -0.41 dom. +0.10 bre. -0.44`	PO4	chainID: A, resSeq: 526, molecule: PHOSPHATE ION
3gm6-A-1005	`sad. +1.12 ruf. -0.28 dom. +0.02 bre. -0.22`	HIS	chainID: A, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 480.0 Å³ d(Fe-oop): 0.022 Å
3gm6-A-1005	`sad. +1.12 ruf. -0.28 dom. +0.02 bre. -0.22`	HIS	chainID: A, resSeq: 398, molecule: Eight-heme nitrite reductase
3gm6-A-1006	`sad. -0.24 ruf. -0.73 dom. +0.22 bre. -0.28`	HIS	chainID: A, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 433.0 Å³ d(Fe-oop): 0.005 Å
3gm6-A-1006	`sad. -0.24 ruf. -0.73 dom. +0.22 bre. -0.28`	HIS	chainID: A, resSeq: 300, molecule: Eight-heme nitrite reductase
3gm6-A-1007	`sad. +0.75 ruf. -0.60 dom. -0.09 bre. -0.20`	HIS	chainID: A, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 473.0 Å³ d(Fe-oop): 0.036 Å
3gm6-A-1007	`sad. +0.75 ruf. -0.60 dom. -0.09 bre. -0.20`	HIS	chainID: A, resSeq: 491, molecule: Eight-heme nitrite reductase
3gm6-A-1008	`sad. -0.46 ruf. -0.62 dom. +0.10 bre. -0.13`	HIS	chainID: A, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 578.0 Å³ d(Fe-oop): 0.045 Å
3gm6-A-1008	`sad. -0.46 ruf. -0.62 dom. +0.10 bre. -0.13`	HIS	chainID: A, resSeq: 415, molecule: Eight-heme nitrite reductase
3gm6-A-1002	`sad. -0.10 ruf. -0.47 dom. +0.05 bre. -0.32`	HIS	chainID: A, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 416.0 Å³ d(Fe-oop): 0.071 Å
3gm6-A-1002	`sad. -0.10 ruf. -0.47 dom. +0.05 bre. -0.32`	HIS	chainID: A, resSeq: 234, molecule: Eight-heme nitrite reductase
3gm6-A-1003	`sad. +0.34 ruf. -0.48 dom. +0.05 bre. -0.24`	HIS	chainID: A, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 532.0 Å³ d(Fe-oop): 0.048 Å
3gm6-A-1003	`sad. +0.34 ruf. -0.48 dom. +0.05 bre. -0.24`	HIS	chainID: A, resSeq: 70, molecule: Eight-heme nitrite reductase
3gm6-A-1001	`sad. +0.04 ruf. -0.29 dom. -0.02 bre. -0.34`	HIS	chainID: A, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 452.0 Å³ d(Fe-oop): 0.057 Å
3gm6-A-1001	`sad. +0.04 ruf. -0.29 dom. -0.02 bre. -0.34`	HIS	chainID: A, resSeq: 44, molecule: Eight-heme nitrite reductase
3gm6-B-1004	`sad. +0.55 ruf. -0.38 dom. +0.11 bre. -0.40`	LYS	chainID: B, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 445.0 Å³ d(Fe-oop): 0.160 Å
3gm6-B-1004	`sad. +0.55 ruf. -0.38 dom. +0.11 bre. -0.40`	PO4	chainID: B, resSeq: 526, molecule: PHOSPHATE ION
3gm6-B-1006	`sad. -0.15 ruf. -0.72 dom. +0.24 bre. -0.28`	HIS	chainID: B, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 440.0 Å³ d(Fe-oop): 0.021 Å
3gm6-B-1006	`sad. -0.15 ruf. -0.72 dom. +0.24 bre. -0.28`	HIS	chainID: B, resSeq: 300, molecule: Eight-heme nitrite reductase
3gm6-B-1007	`sad. +0.71 ruf. -0.66 dom. -0.08 bre. -0.21`	HIS	chainID: B, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 454.0 Å³ d(Fe-oop): 0.046 Å
3gm6-B-1007	`sad. +0.71 ruf. -0.66 dom. -0.08 bre. -0.21`	HIS	chainID: B, resSeq: 491, molecule: Eight-heme nitrite reductase
3gm6-B-1008	`sad. -0.40 ruf. -0.60 dom. +0.15 bre. -0.14`	HIS	chainID: B, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 576.0 Å³ d(Fe-oop): 0.045 Å
3gm6-B-1008	`sad. -0.40 ruf. -0.60 dom. +0.15 bre. -0.14`	HIS	chainID: B, resSeq: 415, molecule: Eight-heme nitrite reductase
3gm6-B-1002	`sad. -0.07 ruf. -0.32 dom. +0.05 bre. -0.33`	HIS	chainID: B, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 379.0 Å³ d(Fe-oop): 0.035 Å
3gm6-B-1002	`sad. -0.07 ruf. -0.32 dom. +0.05 bre. -0.33`	HIS	chainID: B, resSeq: 234, molecule: Eight-heme nitrite reductase
3gm6-B-1003	`sad. +0.36 ruf. -0.50 dom. +0.02 bre. -0.23`	HIS	chainID: B, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 529.0 Å³ d(Fe-oop): 0.041 Å
3gm6-B-1003	`sad. +0.36 ruf. -0.50 dom. +0.02 bre. -0.23`	HIS	chainID: B, resSeq: 70, molecule: Eight-heme nitrite reductase
3gm6-B-1001	`sad. -0.16 ruf. -0.25 dom. -0.08 bre. -0.33`	HIS	chainID: B, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 417.0 Å³ d(Fe-oop): 0.028 Å
3gm6-B-1001	`sad. -0.16 ruf. -0.25 dom. -0.08 bre. -0.33`	HIS	chainID: B, resSeq: 44, molecule: Eight-heme nitrite reductase