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PyDISH No: 05702

PDB: 3gdj,
chainID: C, resSeq: 142
heme type: B

distortion

Protein data

function: oxygen carrier
experiment: X-RAY DIFFRACTION
resolution: 2.0 Å

axial ligand #1: HIS

chainID: C,
resSeq: 87,
Coordination distance[Å]: 2.226
molecule: Hemoglobin subunit alpha
Organism: Camelus dromedarius

axial ligand #2: HOH

chainID: C,
resSeq: 206,
Coordination distance[Å]: 2.489
molecule: water

List of other hemes in pdb:3gdj

ID of heme Distortion Axial ligands on heme Function & structure
3gdj-A-142
sad. +0.06
ruf. -0.23
dom. -0.28
bre. -0.31
HIS chainID: A,
resSeq: 87,
molecule: Hemoglobin subunit alpha
oxygen carrier
oligomeric count: 4
pocket vol.: 522.0 Å3
d(Fe-oop): 0.087 Å
HOH chainID: A, resSeq: 158,
molecule: water
3gdj-B-147
sad. +0.09
ruf. -0.58
dom. -0.15
bre. -0.32
HIS chainID: B,
resSeq: 92,
molecule: Hemoglobin subunit beta
oxygen carrier
oligomeric count: 4
pocket vol.: 550.0 Å3
d(Fe-oop): 0.071 Å
HOH chainID: B, resSeq: 164,
molecule: water
3gdj-D-147
sad. +0.14
ruf. -0.50
dom. -0.16
bre. -0.35
HIS chainID: D,
resSeq: 92,
molecule: Hemoglobin subunit beta
oxygen carrier
oligomeric count: 4
pocket vol.: 548.0 Å3
d(Fe-oop): 0.063 Å
HOH chainID: D, resSeq: 236,
molecule: water