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PyDISH No: 05607

PDB: 3fo3,
chainID: A, resSeq: 1005
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.4 Å

axial ligand #1: HIS

chainID: A,
resSeq: 231,
Coordination distance[Å]: 1.983
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: A,
resSeq: 398,
Coordination distance[Å]: 1.981
molecule: same as ligand #1

List of other hemes in pdb:3fo3

ID of heme Distortion Axial ligands on heme Function & structure
3fo3-A-1004
sad. +0.61
ruf. -0.48
dom. +0.06
bre. -0.10
LYS chainID: A,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 426.0 Å3
d(Fe-oop): 0.008 Å
SO3 chainID: A, resSeq: 526,
molecule: SULFITE ION
3fo3-A-1006
sad. -0.23
ruf. -0.73
dom. +0.19
bre. -0.01
HIS chainID: A,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 410.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: A, resSeq: 300,
molecule: Eight-heme nitrite reductase
3fo3-A-1007
sad. +0.75
ruf. -0.66
dom. -0.08
bre. +0.04
HIS chainID: A,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 461.0 Å3
d(Fe-oop): 0.026 Å
HIS chainID: A, resSeq: 491,
molecule: Eight-heme nitrite reductase
3fo3-A-1008
sad. -0.41
ruf. -0.71
dom. +0.13
bre. -0.01
HIS chainID: A,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 573.0 Å3
d(Fe-oop): 0.008 Å
HIS chainID: A, resSeq: 415,
molecule: Eight-heme nitrite reductase
3fo3-A-1002
sad. -0.07
ruf. -0.43
dom. -0.03
bre. -0.09
HIS chainID: A,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 367.0 Å3
d(Fe-oop): 0.028 Å
HIS chainID: A, resSeq: 234,
molecule: Eight-heme nitrite reductase
3fo3-A-1003
sad. +0.39
ruf. -0.56
dom. +0.01
bre. -0.00
HIS chainID: A,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 559.0 Å3
d(Fe-oop): 0.018 Å
HIS chainID: A, resSeq: 70,
molecule: Eight-heme nitrite reductase
3fo3-A-1001
sad. +0.00
ruf. -0.42
dom. -0.07
bre. -0.08
HIS chainID: A,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 429.0 Å3
d(Fe-oop): 0.027 Å
HIS chainID: A, resSeq: 44,
molecule: Eight-heme nitrite reductase
3fo3-B-1004
sad. +0.60
ruf. -0.47
dom. +0.07
bre. -0.07
LYS chainID: B,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 424.0 Å3
d(Fe-oop): 0.026 Å
SO3 chainID: B, resSeq: 526,
molecule: SULFITE ION
3fo3-B-1005
sad. +1.20
ruf. -0.35
dom. -0.03
bre. +0.04
HIS chainID: B,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 497.0 Å3
d(Fe-oop): 0.019 Å
HIS chainID: B, resSeq: 398,
molecule: Eight-heme nitrite reductase
3fo3-B-1006
sad. -0.23
ruf. -0.70
dom. +0.21
bre. -0.00
HIS chainID: B,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 422.0 Å3
d(Fe-oop): 0.003 Å
HIS chainID: B, resSeq: 300,
molecule: Eight-heme nitrite reductase
3fo3-B-1007
sad. +0.78
ruf. -0.68
dom. -0.08
bre. +0.04
HIS chainID: B,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 447.0 Å3
d(Fe-oop): 0.030 Å
HIS chainID: B, resSeq: 491,
molecule: Eight-heme nitrite reductase
3fo3-B-1008
sad. -0.42
ruf. -0.67
dom. +0.14
bre. -0.00
HIS chainID: B,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 548.0 Å3
d(Fe-oop): 0.006 Å
HIS chainID: B, resSeq: 415,
molecule: Eight-heme nitrite reductase
3fo3-B-1002
sad. -0.07
ruf. -0.38
dom. -0.01
bre. -0.09
HIS chainID: B,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 357.0 Å3
d(Fe-oop): 0.034 Å
HIS chainID: B, resSeq: 234,
molecule: Eight-heme nitrite reductase
3fo3-B-1003
sad. +0.39
ruf. -0.54
dom. +0.01
bre. -0.02
HIS chainID: B,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 546.0 Å3
d(Fe-oop): 0.021 Å
HIS chainID: B, resSeq: 70,
molecule: Eight-heme nitrite reductase
3fo3-B-1001
sad. -0.08
ruf. -0.34
dom. -0.07
bre. -0.10
HIS chainID: B,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 425.0 Å3
d(Fe-oop): 0.034 Å
HIS chainID: B, resSeq: 44,
molecule: Eight-heme nitrite reductase