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Protein data
function: oxidoreductaseexperiment: X-RAY DIFFRACTION
resolution: 2.0 Å
axial ligand #1: HIS
chainID: A,resSeq: 18,
Coordination distance[Å]: 1.884
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio nitratireducens
axial ligand #2: HIS
chainID: A,resSeq: 44,
Coordination distance[Å]: 1.895
molecule: same as ligand #1
List of other hemes in pdb:3f29
ID of heme | Distortion | Axial ligands on heme | Function & structure | |
---|---|---|---|---|
3f29-A-1004 |
sad. +0.58 ruf. -0.44 dom. +0.11 bre. -0.19 |
LYS | chainID: A, resSeq: 188, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 396.0 Å3 d(Fe-oop): 0.101 Å |
HOH | chainID: A, resSeq: 536, molecule: water |
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3f29-A-1005 |
sad. +1.11 ruf. -0.21 dom. +0.01 bre. -0.11 |
HIS | chainID: A, resSeq: 231, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 474.0 Å3 d(Fe-oop): 0.042 Å |
HIS | chainID: A, resSeq: 398, molecule: Eight-heme nitrite reductase |
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3f29-A-1006 |
sad. -0.16 ruf. -0.70 dom. +0.25 bre. -0.15 |
HIS | chainID: A, resSeq: 119, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 409.0 Å3 d(Fe-oop): 0.040 Å |
HIS | chainID: A, resSeq: 300, molecule: Eight-heme nitrite reductase |
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3f29-A-1007 |
sad. +0.75 ruf. -0.54 dom. -0.06 bre. -0.08 |
HIS | chainID: A, resSeq: 383, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 463.0 Å3 d(Fe-oop): 0.052 Å |
HIS | chainID: A, resSeq: 491, molecule: Eight-heme nitrite reductase |
|||
3f29-A-1008 |
sad. -0.37 ruf. -0.67 dom. +0.22 bre. -0.23 |
HIS | chainID: A, resSeq: 372, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 557.0 Å3 d(Fe-oop): 0.091 Å |
HIS | chainID: A, resSeq: 415, molecule: Eight-heme nitrite reductase |
|||
3f29-A-1002 |
sad. -0.06 ruf. -0.32 dom. +0.03 bre. -0.32 |
HIS | chainID: A, resSeq: 39, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 373.0 Å3 d(Fe-oop): 0.072 Å |
HIS | chainID: A, resSeq: 234, molecule: Eight-heme nitrite reductase |
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3f29-A-1003 |
sad. +0.39 ruf. -0.45 dom. +0.04 bre. -0.17 |
HIS | chainID: A, resSeq: 30, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 491.0 Å3 d(Fe-oop): 0.075 Å |
HIS | chainID: A, resSeq: 70, molecule: Eight-heme nitrite reductase |
|||
3f29-B-1004 |
sad. +0.56 ruf. -0.50 dom. +0.11 bre. -0.19 |
LYS | chainID: B, resSeq: 188, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 404.0 Å3 d(Fe-oop): 0.087 Å |
HOH | chainID: B, resSeq: 537, molecule: water |
|||
3f29-B-1005 |
sad. +1.12 ruf. -0.19 dom. +0.02 bre. -0.08 |
HIS | chainID: B, resSeq: 231, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 513.0 Å3 d(Fe-oop): 0.071 Å |
HIS | chainID: B, resSeq: 398, molecule: Eight-heme nitrite reductase |
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3f29-B-1006 |
sad. -0.16 ruf. -0.70 dom. +0.23 bre. -0.20 |
HIS | chainID: B, resSeq: 119, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 423.0 Å3 d(Fe-oop): 0.017 Å |
HIS | chainID: B, resSeq: 300, molecule: Eight-heme nitrite reductase |
|||
3f29-B-1007 |
sad. +0.73 ruf. -0.51 dom. -0.08 bre. -0.10 |
HIS | chainID: B, resSeq: 383, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 460.0 Å3 d(Fe-oop): 0.068 Å |
HIS | chainID: B, resSeq: 491, molecule: Eight-heme nitrite reductase |
|||
3f29-B-1008 |
sad. -0.50 ruf. -0.75 dom. +0.17 bre. -0.18 |
HIS | chainID: B, resSeq: 372, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 558.0 Å3 d(Fe-oop): 0.070 Å |
HIS | chainID: B, resSeq: 415, molecule: Eight-heme nitrite reductase |
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3f29-B-1002 |
sad. -0.10 ruf. -0.39 dom. +0.03 bre. -0.30 |
HIS | chainID: B, resSeq: 39, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 353.0 Å3 d(Fe-oop): 0.073 Å |
HIS | chainID: B, resSeq: 234, molecule: Eight-heme nitrite reductase |
|||
3f29-B-1003 |
sad. +0.37 ruf. -0.38 dom. +0.05 bre. -0.18 |
HIS | chainID: B, resSeq: 30, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 499.0 Å3 d(Fe-oop): 0.089 Å |
HIS | chainID: B, resSeq: 70, molecule: Eight-heme nitrite reductase |
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3f29-B-1001 |
sad. -0.21 ruf. -0.21 dom. -0.07 bre. -0.36 |
HIS | chainID: B, resSeq: 18, molecule: Eight-heme nitrite reductase |
oxidoreductase oligomeric count: 6 pocket vol.: 421.0 Å3 d(Fe-oop): 0.027 Å |
HIS | chainID: B, resSeq: 44, molecule: Eight-heme nitrite reductase |