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PyDISH No: 05576

PDB: 3f29,
chainID: A, resSeq: 1006
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.0 Å

axial ligand #1: HIS

chainID: A,
resSeq: 119,
Coordination distance[Å]: 1.922
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: A,
resSeq: 300,
Coordination distance[Å]: 1.927
molecule: same as ligand #1

List of other hemes in pdb:3f29

ID of heme Distortion Axial ligands on heme Function & structure
3f29-A-1004
sad. +0.58
ruf. -0.44
dom. +0.11
bre. -0.19
LYS chainID: A,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 396.0 Å3
d(Fe-oop): 0.101 Å
HOH chainID: A, resSeq: 536,
molecule: water
3f29-A-1005
sad. +1.11
ruf. -0.21
dom. +0.01
bre. -0.11
HIS chainID: A,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 474.0 Å3
d(Fe-oop): 0.042 Å
HIS chainID: A, resSeq: 398,
molecule: Eight-heme nitrite reductase
3f29-A-1007
sad. +0.75
ruf. -0.54
dom. -0.06
bre. -0.08
HIS chainID: A,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 463.0 Å3
d(Fe-oop): 0.052 Å
HIS chainID: A, resSeq: 491,
molecule: Eight-heme nitrite reductase
3f29-A-1008
sad. -0.37
ruf. -0.67
dom. +0.22
bre. -0.23
HIS chainID: A,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 557.0 Å3
d(Fe-oop): 0.091 Å
HIS chainID: A, resSeq: 415,
molecule: Eight-heme nitrite reductase
3f29-A-1002
sad. -0.06
ruf. -0.32
dom. +0.03
bre. -0.32
HIS chainID: A,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 373.0 Å3
d(Fe-oop): 0.072 Å
HIS chainID: A, resSeq: 234,
molecule: Eight-heme nitrite reductase
3f29-A-1003
sad. +0.39
ruf. -0.45
dom. +0.04
bre. -0.17
HIS chainID: A,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 491.0 Å3
d(Fe-oop): 0.075 Å
HIS chainID: A, resSeq: 70,
molecule: Eight-heme nitrite reductase
3f29-A-1001
sad. -0.01
ruf. -0.29
dom. -0.04
bre. -0.35
HIS chainID: A,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 425.0 Å3
d(Fe-oop): 0.049 Å
HIS chainID: A, resSeq: 44,
molecule: Eight-heme nitrite reductase
3f29-B-1004
sad. +0.56
ruf. -0.50
dom. +0.11
bre. -0.19
LYS chainID: B,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 404.0 Å3
d(Fe-oop): 0.087 Å
HOH chainID: B, resSeq: 537,
molecule: water
3f29-B-1005
sad. +1.12
ruf. -0.19
dom. +0.02
bre. -0.08
HIS chainID: B,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 513.0 Å3
d(Fe-oop): 0.071 Å
HIS chainID: B, resSeq: 398,
molecule: Eight-heme nitrite reductase
3f29-B-1006
sad. -0.16
ruf. -0.70
dom. +0.23
bre. -0.20
HIS chainID: B,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 423.0 Å3
d(Fe-oop): 0.017 Å
HIS chainID: B, resSeq: 300,
molecule: Eight-heme nitrite reductase
3f29-B-1007
sad. +0.73
ruf. -0.51
dom. -0.08
bre. -0.10
HIS chainID: B,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 460.0 Å3
d(Fe-oop): 0.068 Å
HIS chainID: B, resSeq: 491,
molecule: Eight-heme nitrite reductase
3f29-B-1008
sad. -0.50
ruf. -0.75
dom. +0.17
bre. -0.18
HIS chainID: B,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 558.0 Å3
d(Fe-oop): 0.070 Å
HIS chainID: B, resSeq: 415,
molecule: Eight-heme nitrite reductase
3f29-B-1002
sad. -0.10
ruf. -0.39
dom. +0.03
bre. -0.30
HIS chainID: B,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 353.0 Å3
d(Fe-oop): 0.073 Å
HIS chainID: B, resSeq: 234,
molecule: Eight-heme nitrite reductase
3f29-B-1003
sad. +0.37
ruf. -0.38
dom. +0.05
bre. -0.18
HIS chainID: B,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 499.0 Å3
d(Fe-oop): 0.089 Å
HIS chainID: B, resSeq: 70,
molecule: Eight-heme nitrite reductase
3f29-B-1001
sad. -0.21
ruf. -0.21
dom. -0.07
bre. -0.36
HIS chainID: B,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 421.0 Å3
d(Fe-oop): 0.027 Å
HIS chainID: B, resSeq: 44,
molecule: Eight-heme nitrite reductase