Browser

select function

select ligand

clear

→ advanced search

PyDISH No: 05411

PDB: 3e08,
chainID: A, resSeq: 401
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.9 Å

axial ligand #1: HIS

chainID: A,
resSeq: 240,
Coordination distance[Å]: 2.199
molecule: Tryptophan 2,3-dioxygenase
EC number: 1.13.11.11
Organism: Xanthomonas campestris pv. campestris

axial ligand #2: HOH

chainID: A,
resSeq: 405,
Coordination distance[Å]: 2.587
molecule: water

List of other hemes in pdb:3e08

ID of heme	Distortion	Axial ligands on heme		Function & structure
3e08-B-401	`sad. +0.31 ruf. -0.23 dom. -0.11 bre. -0.24`	HIS	chainID: B, resSeq: 240, molecule: Tryptophan 2,3-dioxygenase	oxidoreductase oligomeric count: 4 pocket vol.: 484.0 Å³ d(Fe-oop): 0.072 Å
3e08-B-401	`sad. +0.31 ruf. -0.23 dom. -0.11 bre. -0.24`	HOH	chainID: B, resSeq: 550, molecule: water
3e08-C-401	`sad. +0.33 ruf. -0.26 dom. -0.17 bre. -0.21`	HIS	chainID: C, resSeq: 240, molecule: Tryptophan 2,3-dioxygenase	oxidoreductase oligomeric count: 4 pocket vol.: 459.0 Å³ d(Fe-oop): 0.017 Å
3e08-C-401	`sad. +0.33 ruf. -0.26 dom. -0.17 bre. -0.21`	HOH	chainID: C, resSeq: 643, molecule: water
3e08-D-401	`sad. +0.27 ruf. -0.17 dom. -0.12 bre. -0.19`	HIS	chainID: D, resSeq: 240, molecule: Tryptophan 2,3-dioxygenase	oxidoreductase oligomeric count: 4 pocket vol.: 466.0 Å³ d(Fe-oop): 0.037 Å
3e08-D-401	`sad. +0.27 ruf. -0.17 dom. -0.12 bre. -0.19`	HOH	chainID: D, resSeq: 629, molecule: water
3e08-E-401	`sad. +0.33 ruf. -0.16 dom. -0.07 bre. -0.28`	HIS	chainID: E, resSeq: 240, molecule: Tryptophan 2,3-dioxygenase	oxidoreductase oligomeric count: 4 pocket vol.: 466.0 Å³ d(Fe-oop): 0.067 Å
3e08-E-401	`sad. +0.33 ruf. -0.16 dom. -0.07 bre. -0.28`	HOH	chainID: E, resSeq: 408, molecule: water
3e08-F-401	`sad. +0.38 ruf. -0.36 dom. -0.17 bre. -0.30`	HIS	chainID: F, resSeq: 240, molecule: Tryptophan 2,3-dioxygenase	oxidoreductase oligomeric count: 4 pocket vol.: 472.0 Å³ d(Fe-oop): 0.015 Å
3e08-F-401	`sad. +0.38 ruf. -0.36 dom. -0.17 bre. -0.30`	HOH	chainID: F, resSeq: 503, molecule: water
3e08-G-401	`sad. +0.34 ruf. -0.27 dom. -0.08 bre. -0.29`	HIS	chainID: G, resSeq: 240, molecule: Tryptophan 2,3-dioxygenase	oxidoreductase oligomeric count: 4 pocket vol.: 460.0 Å³ d(Fe-oop): 0.052 Å
3e08-G-401	`sad. +0.34 ruf. -0.27 dom. -0.08 bre. -0.29`	HOH	chainID: G, resSeq: 415, molecule: water
3e08-H-401	`sad. +0.33 ruf. -0.14 dom. -0.11 bre. -0.29`	HIS	chainID: H, resSeq: 240, molecule: Tryptophan 2,3-dioxygenase	oxidoreductase oligomeric count: 4 pocket vol.: 460.0 Å³ d(Fe-oop): 0.111 Å
3e08-H-401	`sad. +0.33 ruf. -0.14 dom. -0.11 bre. -0.29`	HOH	chainID: H, resSeq: 662, molecule: water