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PyDISH No: 05284

PDB: 3cx5,
chainID: D, resSeq: 4003
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.9 Å

axial ligand #1: HIS

chainID: D,
resSeq: 105,
Coordination distance[Å]: 1.987
molecule: Cytochrome c1, heme protein, mitochondrial
EC number: 1.10.2.2
Organism: Saccharomyces cerevisiae

axial ligand #2: MET

chainID: D,
resSeq: 225,
Coordination distance[Å]: 2.238
molecule: same as ligand #1

List of other hemes in pdb:3cx5

ID of heme	Distortion	Axial ligands on heme		Function & structure
3cx5-C-4001	`sad. +0.31 ruf. -0.16 dom. -0.06 bre. -0.17`	HIS	chainID: C, resSeq: 82, molecule: CYTOCHROME B	oxidoreductase oligomeric count: 23 pocket vol.: 424.0 Å³ d(Fe-oop): 0.015 Å
3cx5-C-4001	`sad. +0.31 ruf. -0.16 dom. -0.06 bre. -0.17`	HIS	chainID: C, resSeq: 183, molecule: CYTOCHROME B
3cx5-C-4002	`sad. -0.69 ruf. -0.35 dom. +0.16 bre. -0.09`	HIS	chainID: C, resSeq: 96, molecule: CYTOCHROME B	oxidoreductase oligomeric count: 23 pocket vol.: 395.0 Å³ d(Fe-oop): 0.035 Å
3cx5-C-4002	`sad. -0.69 ruf. -0.35 dom. +0.16 bre. -0.09`	HIS	chainID: C, resSeq: 197, molecule: CYTOCHROME B
3cx5-N-4021	`sad. +0.21 ruf. -0.20 dom. -0.10 bre. -0.19`	HIS	chainID: N, resSeq: 82, molecule: CYTOCHROME B	oxidoreductase oligomeric count: 23 pocket vol.: 414.0 Å³ d(Fe-oop): 0.009 Å
3cx5-N-4021	`sad. +0.21 ruf. -0.20 dom. -0.10 bre. -0.19`	HIS	chainID: N, resSeq: 183, molecule: CYTOCHROME B
3cx5-N-4022	`sad. -0.57 ruf. -0.43 dom. +0.21 bre. -0.10`	HIS	chainID: N, resSeq: 96, molecule: CYTOCHROME B	oxidoreductase oligomeric count: 23 pocket vol.: 394.0 Å³ d(Fe-oop): 0.011 Å
3cx5-N-4022	`sad. -0.57 ruf. -0.43 dom. +0.21 bre. -0.10`	HIS	chainID: N, resSeq: 197, molecule: CYTOCHROME B
3cx5-O-4023	`sad. -0.04 ruf. -0.20 dom. -0.12 bre. -0.16`	HIS	chainID: O, resSeq: 105, molecule: Cytochrome c1, heme protein, mitochondrial	oxidoreductase oligomeric count: 23 pocket vol.: 421.0 Å³ d(Fe-oop): 0.003 Å
3cx5-O-4023	`sad. -0.04 ruf. -0.20 dom. -0.12 bre. -0.16`	MET	chainID: O, resSeq: 225, molecule: Cytochrome c1, heme protein, mitochondrial
3cx5-W-4026	`sad. -0.13 ruf. -0.42 dom. +0.05 bre. -0.20`	HIS	chainID: W, resSeq: 23, molecule: Cytochrome c iso-1	electron transporter oligomeric count: 23 pocket vol.: 327.0 Å³ d(Fe-oop): 0.008 Å
3cx5-W-4026	`sad. -0.13 ruf. -0.42 dom. +0.05 bre. -0.20`	MET	chainID: W, resSeq: 85, molecule: Cytochrome c iso-1