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PyDISH No: 05066

PDB: 3abm,
chainID: N, resSeq: 516
heme type: A

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.95 Å

axial ligand #1: HIS

chainID: N,
resSeq: 376,
Coordination distance[Å]: 2.03
molecule: Cytochrome c oxidase subunit 1
EC number: 1.9.3.1
Organism: Bos taurus

axial ligand #2: PER

chainID: N,
resSeq: 520,
Coordination distance[Å]: 2.367
molecule: PEROXIDE ION

List of other hemes in pdb:3abm

ID of heme Distortion Axial ligands on heme Function & structure
3abm-A-515
sad. -0.46
ruf. -0.06
dom. +0.23
bre. -0.21
HIS chainID: A,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 13
pocket vol.: 553.0 Å3
d(Fe-oop): 0.035 Å
HIS chainID: A, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
3abm-A-516
sad. -0.36
ruf. -0.14
dom. +0.32
bre. -0.12
HIS chainID: A,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 13
pocket vol.: 683.0 Å3
d(Fe-oop): 0.183 Å
PER chainID: A, resSeq: 520,
molecule: PEROXIDE ION
3abm-N-515
sad. -0.60
ruf. -0.06
dom. +0.26
bre. -0.26
HIS chainID: N,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 13
pocket vol.: 594.0 Å3
d(Fe-oop): 0.068 Å
HIS chainID: N, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1