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PyDISH No: 05061

PDB: 3abl,
chainID: N, resSeq: 515
heme type: A

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.1 Å

axial ligand #1: HIS

chainID: N,
resSeq: 61,
Coordination distance[Å]: 2.013
molecule: Cytochrome c oxidase subunit 1
EC number: 1.9.3.1
Organism: Bos taurus

axial ligand #2: HIS

chainID: N,
resSeq: 378,
Coordination distance[Å]: 1.997
molecule: same as ligand #1

List of other hemes in pdb:3abl

ID of heme Distortion Axial ligands on heme Function & structure
3abl-A-515
sad. -0.55
ruf. -0.06
dom. +0.26
bre. -0.11
HIS chainID: A,
resSeq: 61,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 13
pocket vol.: 562.0 Å3
d(Fe-oop): 0.041 Å
HIS chainID: A, resSeq: 378,
molecule: Cytochrome c oxidase subunit 1
3abl-A-516
sad. -0.37
ruf. -0.10
dom. +0.34
bre. -0.25
HIS chainID: A,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 13
pocket vol.: 682.0 Å3
d(Fe-oop): 0.129 Å
PER chainID: A, resSeq: 520,
molecule: PEROXIDE ION
3abl-N-516
sad. -0.29
ruf. -0.04
dom. +0.36
bre. -0.18
HIS chainID: N,
resSeq: 376,
molecule: Cytochrome c oxidase subunit 1
oxidoreductase
oligomeric count: 13
pocket vol.: 690.0 Å3
d(Fe-oop): 0.158 Å
PER chainID: N, resSeq: 520,
molecule: PEROXIDE ION