Browser

select function

select ligand

clear

→ advanced search

PyDISH No: 04903

PDB: 2zo5,
chainID: B, resSeq: 1004
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.7 Å

axial ligand #1: LYS

chainID: B,
resSeq: 188,
Coordination distance[Å]: 1.923
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: AZI

chainID: B,
resSeq: 526,
Coordination distance[Å]: 1.858
molecule: AZIDE ION

List of other hemes in pdb:2zo5

ID of heme	Distortion	Axial ligands on heme		Function & structure
2zo5-A-1004	`sad. +0.59 ruf. -0.42 dom. +0.16 bre. +0.02`	AZI	chainID: A, resSeq: 526, molecule: AZIDE ION	oxidoreductase oligomeric count: 6 pocket vol.: 394.0 Å³ d(Fe-oop): 0.004 Å
2zo5-A-1004	`sad. +0.59 ruf. -0.42 dom. +0.16 bre. +0.02`	HOH	chainID: A, resSeq: 1014, molecule: water
2zo5-A-1005	`sad. +1.10 ruf. -0.29 dom. -0.04 bre. +0.09`	HIS	chainID: A, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 468.0 Å³ d(Fe-oop): 0.024 Å
2zo5-A-1005	`sad. +1.10 ruf. -0.29 dom. -0.04 bre. +0.09`	HIS	chainID: A, resSeq: 398, molecule: Eight-heme nitrite reductase
2zo5-A-1006	`sad. -0.20 ruf. -0.75 dom. +0.21 bre. +0.01`	HIS	chainID: A, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 411.0 Å³ d(Fe-oop): 0.002 Å
2zo5-A-1006	`sad. -0.20 ruf. -0.75 dom. +0.21 bre. +0.01`	HIS	chainID: A, resSeq: 300, molecule: Eight-heme nitrite reductase
2zo5-A-1007	`sad. +0.77 ruf. -0.68 dom. -0.12 bre. +0.10`	HIS	chainID: A, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 440.0 Å³ d(Fe-oop): 0.035 Å
2zo5-A-1007	`sad. +0.77 ruf. -0.68 dom. -0.12 bre. +0.10`	HIS	chainID: A, resSeq: 491, molecule: Eight-heme nitrite reductase
2zo5-A-1008	`sad. -0.35 ruf. -0.83 dom. +0.16 bre. +0.03`	HIS	chainID: A, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 565.0 Å³ d(Fe-oop): 0.044 Å
2zo5-A-1008	`sad. -0.35 ruf. -0.83 dom. +0.16 bre. +0.03`	HIS	chainID: A, resSeq: 415, molecule: Eight-heme nitrite reductase
2zo5-A-1002	`sad. -0.12 ruf. -0.41 dom. +0.03 bre. -0.09`	HIS	chainID: A, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 369.0 Å³ d(Fe-oop): 0.047 Å
2zo5-A-1002	`sad. -0.12 ruf. -0.41 dom. +0.03 bre. -0.09`	HIS	chainID: A, resSeq: 234, molecule: Eight-heme nitrite reductase
2zo5-A-1003	`sad. +0.38 ruf. -0.56 dom. +0.02 bre. -0.01`	HIS	chainID: A, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 510.0 Å³ d(Fe-oop): 0.035 Å
2zo5-A-1003	`sad. +0.38 ruf. -0.56 dom. +0.02 bre. -0.01`	HIS	chainID: A, resSeq: 70, molecule: Eight-heme nitrite reductase
2zo5-A-1001	`sad. +0.07 ruf. -0.34 dom. -0.03 bre. -0.08`	HIS	chainID: A, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 410.0 Å³ d(Fe-oop): 0.060 Å
2zo5-A-1001	`sad. +0.07 ruf. -0.34 dom. -0.03 bre. -0.08`	HIS	chainID: A, resSeq: 44, molecule: Eight-heme nitrite reductase
2zo5-B-1005	`sad. +1.13 ruf. -0.27 dom. -0.00 bre. +0.05`	HIS	chainID: B, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 476.0 Å³ d(Fe-oop): 0.028 Å
2zo5-B-1005	`sad. +1.13 ruf. -0.27 dom. -0.00 bre. +0.05`	HIS	chainID: B, resSeq: 398, molecule: Eight-heme nitrite reductase
2zo5-B-1006	`sad. -0.19 ruf. -0.75 dom. +0.20 bre. -0.04`	HIS	chainID: B, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 407.0 Å³ d(Fe-oop): 0.006 Å
2zo5-B-1006	`sad. -0.19 ruf. -0.75 dom. +0.20 bre. -0.04`	HIS	chainID: B, resSeq: 300, molecule: Eight-heme nitrite reductase
2zo5-B-1007	`sad. +0.76 ruf. -0.61 dom. -0.11 bre. +0.08`	HIS	chainID: B, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 467.0 Å³ d(Fe-oop): 0.040 Å
2zo5-B-1007	`sad. +0.76 ruf. -0.61 dom. -0.11 bre. +0.08`	HIS	chainID: B, resSeq: 491, molecule: Eight-heme nitrite reductase
2zo5-B-1008	`sad. -0.29 ruf. -0.85 dom. +0.13 bre. +0.03`	HIS	chainID: B, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 523.0 Å³ d(Fe-oop): 0.058 Å
2zo5-B-1008	`sad. -0.29 ruf. -0.85 dom. +0.13 bre. +0.03`	HIS	chainID: B, resSeq: 415, molecule: Eight-heme nitrite reductase
2zo5-B-1002	`sad. -0.09 ruf. -0.37 dom. +0.02 bre. -0.05`	HIS	chainID: B, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 357.0 Å³ d(Fe-oop): 0.039 Å
2zo5-B-1002	`sad. -0.09 ruf. -0.37 dom. +0.02 bre. -0.05`	HIS	chainID: B, resSeq: 234, molecule: Eight-heme nitrite reductase
2zo5-B-1003	`sad. +0.33 ruf. -0.52 dom. +0.02 bre. -0.00`	HIS	chainID: B, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 481.0 Å³ d(Fe-oop): 0.044 Å
2zo5-B-1003	`sad. +0.33 ruf. -0.52 dom. +0.02 bre. -0.00`	HIS	chainID: B, resSeq: 70, molecule: Eight-heme nitrite reductase
2zo5-B-1001	`sad. -0.18 ruf. -0.36 dom. -0.05 bre. -0.12`	HIS	chainID: B, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 419.0 Å³ d(Fe-oop): 0.065 Å
2zo5-B-1001	`sad. -0.18 ruf. -0.36 dom. -0.05 bre. -0.12`	HIS	chainID: B, resSeq: 44, molecule: Eight-heme nitrite reductase