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PyDISH No: 04901

PDB: 2zo5,
chainID: A, resSeq: 1003
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.7 Å

axial ligand #1: HIS

chainID: A,
resSeq: 30,
Coordination distance[Å]: 1.99
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: A,
resSeq: 70,
Coordination distance[Å]: 1.977
molecule: same as ligand #1

List of other hemes in pdb:2zo5

ID of heme Distortion Axial ligands on heme Function & structure
2zo5-A-1004
sad. +0.59
ruf. -0.42
dom. +0.16
bre. +0.02
AZI chainID: A,
resSeq: 526,
molecule: AZIDE ION
oxidoreductase
oligomeric count: 6
pocket vol.: 394.0 Å3
d(Fe-oop): 0.004 Å
HOH chainID: A, resSeq: 1014,
molecule: water
2zo5-A-1005
sad. +1.10
ruf. -0.29
dom. -0.04
bre. +0.09
HIS chainID: A,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 468.0 Å3
d(Fe-oop): 0.024 Å
HIS chainID: A, resSeq: 398,
molecule: Eight-heme nitrite reductase
2zo5-A-1006
sad. -0.20
ruf. -0.75
dom. +0.21
bre. +0.01
HIS chainID: A,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 411.0 Å3
d(Fe-oop): 0.002 Å
HIS chainID: A, resSeq: 300,
molecule: Eight-heme nitrite reductase
2zo5-A-1007
sad. +0.77
ruf. -0.68
dom. -0.12
bre. +0.10
HIS chainID: A,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 440.0 Å3
d(Fe-oop): 0.035 Å
HIS chainID: A, resSeq: 491,
molecule: Eight-heme nitrite reductase
2zo5-A-1008
sad. -0.35
ruf. -0.83
dom. +0.16
bre. +0.03
HIS chainID: A,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 565.0 Å3
d(Fe-oop): 0.044 Å
HIS chainID: A, resSeq: 415,
molecule: Eight-heme nitrite reductase
2zo5-A-1002
sad. -0.12
ruf. -0.41
dom. +0.03
bre. -0.09
HIS chainID: A,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 369.0 Å3
d(Fe-oop): 0.047 Å
HIS chainID: A, resSeq: 234,
molecule: Eight-heme nitrite reductase
2zo5-A-1001
sad. +0.07
ruf. -0.34
dom. -0.03
bre. -0.08
HIS chainID: A,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 410.0 Å3
d(Fe-oop): 0.060 Å
HIS chainID: A, resSeq: 44,
molecule: Eight-heme nitrite reductase
2zo5-B-1004
sad. +0.62
ruf. -0.45
dom. +0.17
bre. +0.03
LYS chainID: B,
resSeq: 188,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 391.0 Å3
d(Fe-oop): 0.018 Å
AZI chainID: B, resSeq: 526,
molecule: AZIDE ION
2zo5-B-1005
sad. +1.13
ruf. -0.27
dom. -0.00
bre. +0.05
HIS chainID: B,
resSeq: 231,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 476.0 Å3
d(Fe-oop): 0.028 Å
HIS chainID: B, resSeq: 398,
molecule: Eight-heme nitrite reductase
2zo5-B-1006
sad. -0.19
ruf. -0.75
dom. +0.20
bre. -0.04
HIS chainID: B,
resSeq: 119,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 407.0 Å3
d(Fe-oop): 0.006 Å
HIS chainID: B, resSeq: 300,
molecule: Eight-heme nitrite reductase
2zo5-B-1007
sad. +0.76
ruf. -0.61
dom. -0.11
bre. +0.08
HIS chainID: B,
resSeq: 383,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 467.0 Å3
d(Fe-oop): 0.040 Å
HIS chainID: B, resSeq: 491,
molecule: Eight-heme nitrite reductase
2zo5-B-1008
sad. -0.29
ruf. -0.85
dom. +0.13
bre. +0.03
HIS chainID: B,
resSeq: 372,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 523.0 Å3
d(Fe-oop): 0.058 Å
HIS chainID: B, resSeq: 415,
molecule: Eight-heme nitrite reductase
2zo5-B-1002
sad. -0.09
ruf. -0.37
dom. +0.02
bre. -0.05
HIS chainID: B,
resSeq: 39,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 357.0 Å3
d(Fe-oop): 0.039 Å
HIS chainID: B, resSeq: 234,
molecule: Eight-heme nitrite reductase
2zo5-B-1003
sad. +0.33
ruf. -0.52
dom. +0.02
bre. -0.00
HIS chainID: B,
resSeq: 30,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 481.0 Å3
d(Fe-oop): 0.044 Å
HIS chainID: B, resSeq: 70,
molecule: Eight-heme nitrite reductase
2zo5-B-1001
sad. -0.18
ruf. -0.36
dom. -0.05
bre. -0.12
HIS chainID: B,
resSeq: 18,
molecule: Eight-heme nitrite reductase
oxidoreductase
oligomeric count: 6
pocket vol.: 419.0 Å3
d(Fe-oop): 0.065 Å
HIS chainID: B, resSeq: 44,
molecule: Eight-heme nitrite reductase