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PyDISH No: 04843

PDB: 2z47,
chainID: A, resSeq: 1004
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 1.6 Å

axial ligand #1: HIS

chainID: A,
resSeq: 70,
Coordination distance[Å]: 1.955
molecule: Cytochrome c3
Organism: Desulfovibrio vulgaris str. 'Miyazaki F'

axial ligand #2: HIS

chainID: A,
resSeq: 106,
Coordination distance[Å]: 2.0
molecule: same as ligand #1

List of other hemes in pdb:2z47

ID of heme Distortion Axial ligands on heme Function & structure
2z47-A-1002
sad. +0.15
ruf. -0.70
dom. -0.09
bre. -0.18
HIS chainID: A,
resSeq: 35,
molecule: Cytochrome c3
electron transporter
oligomeric count: 1
pocket vol.: 494.0 Å3
d(Fe-oop): 0.004 Å
HIS chainID: A, resSeq: 52,
molecule: Cytochrome c3
2z47-A-1001
sad. +0.26
ruf. -0.63
dom. -0.23
bre. -0.20
HIS chainID: A,
resSeq: 22,
molecule: Cytochrome c3
electron transporter
oligomeric count: 1
pocket vol.: 454.0 Å3
d(Fe-oop): 0.016 Å
HIS chainID: A, resSeq: 34,
molecule: Cytochrome c3
2z47-A-1003
sad. +0.25
ruf. -0.21
dom. -0.16
bre. -0.19
HIS chainID: A,
resSeq: 25,
molecule: Cytochrome c3
electron transporter
oligomeric count: 1
pocket vol.: 530.0 Å3
d(Fe-oop): 0.048 Å
HIS chainID: A, resSeq: 83,
molecule: Cytochrome c3
2z47-B-3004
sad. +0.95
ruf. +0.49
dom. +0.13
bre. -0.12
HIS chainID: B,
resSeq: 2070,
molecule: Cytochrome c3
electron transporter
oligomeric count: 1
pocket vol.: 398.0 Å3
d(Fe-oop): 0.007 Å
HIS chainID: B, resSeq: 2106,
molecule: Cytochrome c3
2z47-B-3002
sad. +0.04
ruf. -0.62
dom. -0.10
bre. -0.20
HIS chainID: B,
resSeq: 2035,
molecule: Cytochrome c3
electron transporter
oligomeric count: 1
pocket vol.: 501.0 Å3
d(Fe-oop): 0.014 Å
HIS chainID: B, resSeq: 2052,
molecule: Cytochrome c3
2z47-B-3001
sad. +0.25
ruf. -0.73
dom. -0.22
bre. -0.15
HIS chainID: B,
resSeq: 2022,
molecule: Cytochrome c3
electron transporter
oligomeric count: 1
pocket vol.: 447.0 Å3
d(Fe-oop): 0.032 Å
HIS chainID: B, resSeq: 2034,
molecule: Cytochrome c3
2z47-B-3003
sad. +0.17
ruf. -0.25
dom. -0.15
bre. -0.20
HIS chainID: B,
resSeq: 2025,
molecule: Cytochrome c3
electron transporter
oligomeric count: 1
pocket vol.: 478.0 Å3
d(Fe-oop): 0.013 Å
HIS chainID: B, resSeq: 2083,
molecule: Cytochrome c3