Browser

select function

select ligand

clear

→ advanced search

PyDISH No: 04827

PDB: 2yxc,
chainID: A, resSeq: 1003
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 1.5 Å

axial ligand #1: MET

chainID: A,
resSeq: 25,
Coordination distance[Å]: 2.344
molecule: Cytochrome c3
Organism: Desulfovibrio vulgaris str. 'Miyazaki F'

axial ligand #2: HIS

chainID: A,
resSeq: 83,
Coordination distance[Å]: 2.002
molecule: same as ligand #1

List of other hemes in pdb:2yxc

ID of heme	Distortion	Axial ligands on heme		Function & structure
2yxc-A-1004	`sad. +1.01 ruf. +0.23 dom. +0.05 bre. -0.16`	HIS	chainID: A, resSeq: 70, molecule: Cytochrome c3	electron transporter oligomeric count: 1 pocket vol.: 382.0 Å³ d(Fe-oop): 0.022 Å
2yxc-A-1004	`sad. +1.01 ruf. +0.23 dom. +0.05 bre. -0.16`	HIS	chainID: A, resSeq: 106, molecule: Cytochrome c3
2yxc-A-1002	`sad. -0.01 ruf. -0.73 dom. -0.03 bre. -0.17`	HIS	chainID: A, resSeq: 35, molecule: Cytochrome c3	electron transporter oligomeric count: 1 pocket vol.: 503.0 Å³ d(Fe-oop): 0.032 Å
2yxc-A-1002	`sad. -0.01 ruf. -0.73 dom. -0.03 bre. -0.17`	HIS	chainID: A, resSeq: 52, molecule: Cytochrome c3
2yxc-A-1001	`sad. +0.15 ruf. -0.67 dom. -0.19 bre. -0.15`	HIS	chainID: A, resSeq: 22, molecule: Cytochrome c3	electron transporter oligomeric count: 1 pocket vol.: 470.0 Å³ d(Fe-oop): 0.032 Å
2yxc-A-1001	`sad. +0.15 ruf. -0.67 dom. -0.19 bre. -0.15`	HIS	chainID: A, resSeq: 34, molecule: Cytochrome c3