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PyDISH No: 04774

PDB: 2ybb,
chainID: Y, resSeq: 500
heme type: B

distortion

Protein data

function: electron transporter
experiment: ELECTRON MICROSCOPY
resolution: 19.0 Å

axial ligand #1: HIS

chainID: Y,
resSeq: 18,
Coordination distance[Å]: 2.103
molecule: CYTOCHROME C
Organism: BOS TAURUS

axial ligand #2: MET

chainID: Y,
resSeq: 80,
Coordination distance[Å]: 2.297
molecule: same as ligand #1

List of other hemes in pdb:2ybb

ID of heme	Distortion	Axial ligands on heme		Function & structure
2ybb-C-501	`sad. +0.25 ruf. -0.05 dom. -0.14 bre. -0.15`	HIS	chainID: C, resSeq: 83, molecule: CYTOCHROME B	oxidoreductase oligomeric count: 48 pocket vol.: 414.0 Å³ d(Fe-oop): 0.003 Å
2ybb-C-501	`sad. +0.25 ruf. -0.05 dom. -0.14 bre. -0.15`	HIS	chainID: C, resSeq: 182, molecule: CYTOCHROME B
2ybb-C-502	`sad. -0.77 ruf. -0.41 dom. +0.21 bre. -0.14`	HIS	chainID: C, resSeq: 97, molecule: CYTOCHROME B	oxidoreductase oligomeric count: 48 pocket vol.: 389.0 Å³ d(Fe-oop): 0.006 Å
2ybb-C-502	`sad. -0.77 ruf. -0.41 dom. +0.21 bre. -0.14`	HIS	chainID: C, resSeq: 196, molecule: CYTOCHROME B
2ybb-D-501	`sad. -0.12 ruf. -0.28 dom. -0.25 bre. -0.03`	HIS	chainID: D, resSeq: 41, molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL	oxidoreductase oligomeric count: 48 pocket vol.: 402.0 Å³ d(Fe-oop): 0.038 Å
2ybb-D-501	`sad. -0.12 ruf. -0.28 dom. -0.25 bre. -0.03`	MET	chainID: D, resSeq: 160, molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL
2ybb-L-515	`sad. -0.59 ruf. -0.27 dom. +0.29 bre. +0.04`	HIS	chainID: L, resSeq: 61, molecule: CYTOCHROME C OXIDASE SUBUNIT 1	oxidoreductase oligomeric count: 48 pocket vol.: 624.0 Å³ d(Fe-oop): 0.040 Å
2ybb-L-515	`sad. -0.59 ruf. -0.27 dom. +0.29 bre. +0.04`	HIS	chainID: L, resSeq: 378, molecule: CYTOCHROME C OXIDASE SUBUNIT 1
2ybb-L-516	`sad. -0.27 ruf. -0.21 dom. +0.31 bre. -0.11`	HIS	chainID: L, resSeq: 376, molecule: CYTOCHROME C OXIDASE SUBUNIT 1	oxidoreductase oligomeric count: 48 pocket vol.: 739.0 Å³ d(Fe-oop): 0.024 Å
2ybb-L-516	`sad. -0.27 ruf. -0.21 dom. +0.31 bre. -0.11`	Not assigned.
2ybb-c-501	`sad. +0.16 ruf. -0.28 dom. -0.08 bre. -0.11`	HIS	chainID: c, resSeq: 83, molecule: CYTOCHROME B	oxidoreductase oligomeric count: 48 pocket vol.: 406.0 Å³ d(Fe-oop): 0.048 Å
2ybb-c-501	`sad. +0.16 ruf. -0.28 dom. -0.08 bre. -0.11`	HIS	chainID: c, resSeq: 182, molecule: CYTOCHROME B
2ybb-c-502	`sad. -0.76 ruf. -0.43 dom. +0.06 bre. -0.13`	HIS	chainID: c, resSeq: 97, molecule: CYTOCHROME B	oxidoreductase oligomeric count: 48 pocket vol.: 399.0 Å³ d(Fe-oop): 0.036 Å
2ybb-c-502	`sad. -0.76 ruf. -0.43 dom. +0.06 bre. -0.13`	HIS	chainID: c, resSeq: 196, molecule: CYTOCHROME B
2ybb-d-501	`sad. -0.22 ruf. -0.45 dom. -0.23 bre. +0.08`	HIS	chainID: d, resSeq: 41, molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL	oxidoreductase oligomeric count: 48 pocket vol.: 395.0 Å³ d(Fe-oop): 0.018 Å
2ybb-d-501	`sad. -0.22 ruf. -0.45 dom. -0.23 bre. +0.08`	MET	chainID: d, resSeq: 160, molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL