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PyDISH No: 04769

PDB: 2ybb,
chainID: C, resSeq: 501
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: ELECTRON MICROSCOPY
resolution: 19.0 Å

axial ligand #1: HIS

chainID: C,
resSeq: 83,
Coordination distance[Å]: 2.002
molecule: CYTOCHROME B
EC number: 1.10.2.2
Organism: BOS TAURUS

axial ligand #2: HIS

chainID: C,
resSeq: 182,
Coordination distance[Å]: 2.005
molecule: same as ligand #1

List of other hemes in pdb:2ybb

ID of heme	Distortion	Axial ligands on heme		Function & structure
2ybb-C-502	`sad. -0.77 ruf. -0.41 dom. +0.21 bre. -0.14`	HIS	chainID: C, resSeq: 97, molecule: CYTOCHROME B	oxidoreductase oligomeric count: 48 pocket vol.: 389.0 Å³ d(Fe-oop): 0.006 Å
2ybb-C-502	`sad. -0.77 ruf. -0.41 dom. +0.21 bre. -0.14`	HIS	chainID: C, resSeq: 196, molecule: CYTOCHROME B
2ybb-D-501	`sad. -0.12 ruf. -0.28 dom. -0.25 bre. -0.03`	HIS	chainID: D, resSeq: 41, molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL	oxidoreductase oligomeric count: 48 pocket vol.: 402.0 Å³ d(Fe-oop): 0.038 Å
2ybb-D-501	`sad. -0.12 ruf. -0.28 dom. -0.25 bre. -0.03`	MET	chainID: D, resSeq: 160, molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL
2ybb-L-515	`sad. -0.59 ruf. -0.27 dom. +0.29 bre. +0.04`	HIS	chainID: L, resSeq: 61, molecule: CYTOCHROME C OXIDASE SUBUNIT 1	oxidoreductase oligomeric count: 48 pocket vol.: 624.0 Å³ d(Fe-oop): 0.040 Å
2ybb-L-515	`sad. -0.59 ruf. -0.27 dom. +0.29 bre. +0.04`	HIS	chainID: L, resSeq: 378, molecule: CYTOCHROME C OXIDASE SUBUNIT 1
2ybb-L-516	`sad. -0.27 ruf. -0.21 dom. +0.31 bre. -0.11`	HIS	chainID: L, resSeq: 376, molecule: CYTOCHROME C OXIDASE SUBUNIT 1	oxidoreductase oligomeric count: 48 pocket vol.: 739.0 Å³ d(Fe-oop): 0.024 Å
2ybb-L-516	`sad. -0.27 ruf. -0.21 dom. +0.31 bre. -0.11`	Not assigned.
2ybb-Y-500	`sad. +0.01 ruf. -0.14 dom. +0.13 bre. -0.05`	HIS	chainID: Y, resSeq: 18, molecule: CYTOCHROME C	electron transporter oligomeric count: 48 pocket vol.: 326.0 Å³ d(Fe-oop): 0.034 Å
2ybb-Y-500	`sad. +0.01 ruf. -0.14 dom. +0.13 bre. -0.05`	MET	chainID: Y, resSeq: 80, molecule: CYTOCHROME C
2ybb-c-501	`sad. +0.16 ruf. -0.28 dom. -0.08 bre. -0.11`	HIS	chainID: c, resSeq: 83, molecule: CYTOCHROME B	oxidoreductase oligomeric count: 48 pocket vol.: 406.0 Å³ d(Fe-oop): 0.048 Å
2ybb-c-501	`sad. +0.16 ruf. -0.28 dom. -0.08 bre. -0.11`	HIS	chainID: c, resSeq: 182, molecule: CYTOCHROME B
2ybb-c-502	`sad. -0.76 ruf. -0.43 dom. +0.06 bre. -0.13`	HIS	chainID: c, resSeq: 97, molecule: CYTOCHROME B	oxidoreductase oligomeric count: 48 pocket vol.: 399.0 Å³ d(Fe-oop): 0.036 Å
2ybb-c-502	`sad. -0.76 ruf. -0.43 dom. +0.06 bre. -0.13`	HIS	chainID: c, resSeq: 196, molecule: CYTOCHROME B
2ybb-d-501	`sad. -0.22 ruf. -0.45 dom. -0.23 bre. +0.08`	HIS	chainID: d, resSeq: 41, molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL	oxidoreductase oligomeric count: 48 pocket vol.: 395.0 Å³ d(Fe-oop): 0.018 Å
2ybb-d-501	`sad. -0.22 ruf. -0.45 dom. -0.23 bre. +0.08`	MET	chainID: d, resSeq: 160, molecule: CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL