Browser

select function

select ligand

clear

→ advanced search

PyDISH No: 04550

PDB: 2vv8,
chainID: D, resSeq: 1259
heme type: B

distortion

Protein data

function: transferase
experiment: X-RAY DIFFRACTION
resolution: 1.61 Å

axial ligand #1: HIS

chainID: D,
resSeq: 200,
Coordination distance[Å]: 1.99
molecule: SENSOR PROTEIN FIXL
EC number: 2.7.13.3, 2.7.3.-
Organism: BRADYRHIZOBIUM JAPONICUM

axial ligand #2: CMO

chainID: D,
resSeq: 1260,
Coordination distance[Å]: 1.75
molecule: CARBON MONOXIDE

List of other hemes in pdb:2vv8

ID of heme	Distortion	Axial ligands on heme		Function & structure
2vv8-A-1258	`sad. +0.42 ruf. +0.18 dom. -0.29 bre. -0.21`	HIS	chainID: A, resSeq: 200, molecule: SENSOR PROTEIN FIXL	transferase oligomeric count: 4 pocket vol.: 416.0 Å³ d(Fe-oop): 0.026 Å
2vv8-A-1258	`sad. +0.42 ruf. +0.18 dom. -0.29 bre. -0.21`	CMO	chainID: A, resSeq: 1259, molecule: CARBON MONOXIDE
2vv8-B-1259	`sad. +0.53 ruf. +0.30 dom. -0.25 bre. -0.22`	HIS	chainID: B, resSeq: 200, molecule: SENSOR PROTEIN FIXL	transferase oligomeric count: 4 pocket vol.: 401.0 Å³ d(Fe-oop): 0.016 Å
2vv8-B-1259	`sad. +0.53 ruf. +0.30 dom. -0.25 bre. -0.22`	CMO	chainID: B, resSeq: 1260, molecule: CARBON MONOXIDE
2vv8-C-1259	`sad. +0.47 ruf. +0.11 dom. -0.27 bre. -0.13`	HIS	chainID: C, resSeq: 200, molecule: SENSOR PROTEIN FIXL	transferase oligomeric count: 4 pocket vol.: 421.0 Å³ d(Fe-oop): 0.017 Å
2vv8-C-1259	`sad. +0.47 ruf. +0.11 dom. -0.27 bre. -0.13`	CMO	chainID: C, resSeq: 1260, molecule: CARBON MONOXIDE