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Protein data
function: oxidoreductaseexperiment: X-RAY DIFFRACTION
resolution: 2.8 Å
axial ligand #1: HIS
chainID: B,resSeq: 320,
Coordination distance[Å]: 2.129
molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA
EC number: 1.7.2.2
Organism: DESULFOVIBRIO VULGARIS
axial ligand #2: HIS
chainID: B,resSeq: 434,
Coordination distance[Å]: 2.033
molecule: same as ligand #1
List of other hemes in pdb:2vr0
| ID of heme | Distortion | Axial ligands on heme | Function & structure | |
|---|---|---|---|---|
2vr0-A-1001 |
sad. +0.50 ruf. -0.77 dom. +0.18 bre. -0.18 |
LYS | chainID: A, resSeq: 151, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 467.0 Å3 d(Fe-oop): 0.004 Å |
| HOH | chainID: A, resSeq: 2023, molecule: water |
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2vr0-A-1002 |
sad. +0.60 ruf. -0.57 dom. -0.12 bre. -0.09 |
HIS | chainID: A, resSeq: 191, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 388.0 Å3 d(Fe-oop): 0.030 Å |
| HIS | chainID: A, resSeq: 335, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
|||
2vr0-A-1003 |
sad. -0.20 ruf. -0.66 dom. +0.19 bre. +0.01 |
HIS | chainID: A, resSeq: 121, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 410.0 Å3 d(Fe-oop): 0.028 Å |
| HIS | chainID: A, resSeq: 233, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
|||
2vr0-A-1004 |
sad. +0.58 ruf. -1.08 dom. +0.11 bre. +0.07 |
HIS | chainID: A, resSeq: 320, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 392.0 Å3 d(Fe-oop): 0.009 Å |
| HIS | chainID: A, resSeq: 434, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
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2vr0-A-1005 |
sad. +0.62 ruf. -0.85 dom. +0.18 bre. -0.06 |
HIS | chainID: A, resSeq: 309, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 476.0 Å3 d(Fe-oop): 0.014 Å |
| HIS | chainID: A, resSeq: 353, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
|||
2vr0-B-1001 |
sad. +0.53 ruf. -0.83 dom. +0.17 bre. -0.21 |
LYS | chainID: B, resSeq: 151, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 457.0 Å3 d(Fe-oop): 0.036 Å |
| HOH | chainID: B, resSeq: 2041, molecule: water |
|||
2vr0-B-1002 |
sad. +0.71 ruf. -0.48 dom. -0.09 bre. -0.16 |
HIS | chainID: B, resSeq: 191, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 378.0 Å3 d(Fe-oop): 0.037 Å |
| HIS | chainID: B, resSeq: 335, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
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2vr0-B-1003 |
sad. -0.09 ruf. -0.83 dom. +0.15 bre. +0.04 |
HIS | chainID: B, resSeq: 121, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 401.0 Å3 d(Fe-oop): 0.057 Å |
| HIS | chainID: B, resSeq: 233, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
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2vr0-B-1005 |
sad. +0.61 ruf. -0.61 dom. +0.22 bre. -0.05 |
HIS | chainID: B, resSeq: 309, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 448.0 Å3 d(Fe-oop): 0.101 Å |
| HIS | chainID: B, resSeq: 353, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
|||
2vr0-C-1001 |
sad. -0.23 ruf. +0.12 dom. +0.23 bre. -0.10 |
MET | chainID: C, resSeq: 49, molecule: NAPC/NIRT CYTOCHROME C FAMILY PROTEIN |
oxidoreductase oligomeric count: 6 pocket vol.: 532.0 Å3 d(Fe-oop): 0.073 Å |
| ASP | chainID: C, resSeq: 89, molecule: NAPC/NIRT CYTOCHROME C FAMILY PROTEIN |
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2vr0-C-1002 |
sad. +0.24 ruf. -0.96 dom. +0.07 bre. -0.04 |
HIS | chainID: C, resSeq: 70, molecule: NAPC/NIRT CYTOCHROME C FAMILY PROTEIN |
oxidoreductase oligomeric count: 6 pocket vol.: 389.0 Å3 d(Fe-oop): 0.196 Å |
| HIS | chainID: C, resSeq: 145, molecule: NAPC/NIRT CYTOCHROME C FAMILY PROTEIN |
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2vr0-C-1003 |
sad. +0.21 ruf. -1.41 dom. +0.27 bre. +0.13 |
HIS | chainID: C, resSeq: 61, molecule: NAPC/NIRT CYTOCHROME C FAMILY PROTEIN |
oxidoreductase oligomeric count: 6 pocket vol.: 452.0 Å3 d(Fe-oop): 0.042 Å |
| HIS | chainID: C, resSeq: 120, molecule: NAPC/NIRT CYTOCHROME C FAMILY PROTEIN |
|||
2vr0-C-1004 |
sad. +0.48 ruf. -0.61 dom. -0.11 bre. -0.16 |
LYS | chainID: A, resSeq: 331, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 414.0 Å3 d(Fe-oop): 0.004 Å |
| HIS | chainID: C, resSeq: 140, molecule: NAPC/NIRT CYTOCHROME C FAMILY PROTEIN |
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2vr0-D-1001 |
sad. +0.66 ruf. -0.70 dom. +0.36 bre. -0.17 |
LYS | chainID: D, resSeq: 151, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 451.0 Å3 d(Fe-oop): 0.076 Å |
| HOH | chainID: D, resSeq: 2019, molecule: water |
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2vr0-D-1002 |
sad. +0.51 ruf. -0.71 dom. -0.12 bre. -0.15 |
HIS | chainID: D, resSeq: 191, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 402.0 Å3 d(Fe-oop): 0.032 Å |
| HIS | chainID: D, resSeq: 335, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
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2vr0-D-1003 |
sad. -0.12 ruf. -1.08 dom. +0.42 bre. -0.01 |
HIS | chainID: D, resSeq: 121, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 393.0 Å3 d(Fe-oop): 0.000 Å |
| HIS | chainID: D, resSeq: 233, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
|||
2vr0-D-1004 |
sad. +0.50 ruf. -1.27 dom. +0.07 bre. +0.05 |
HIS | chainID: D, resSeq: 320, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 394.0 Å3 d(Fe-oop): 0.040 Å |
| HIS | chainID: D, resSeq: 434, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
|||
2vr0-D-1005 |
sad. +0.57 ruf. -0.71 dom. +0.06 bre. +0.01 |
HIS | chainID: D, resSeq: 309, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 471.0 Å3 d(Fe-oop): 0.072 Å |
| HIS | chainID: D, resSeq: 353, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
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2vr0-E-1001 |
sad. +0.63 ruf. -0.90 dom. +0.15 bre. -0.13 |
LYS | chainID: E, resSeq: 151, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 456.0 Å3 d(Fe-oop): 0.052 Å |
| HOH | chainID: E, resSeq: 2013, molecule: water |
|||
2vr0-E-1002 |
sad. +0.66 ruf. -0.79 dom. -0.06 bre. -0.04 |
HIS | chainID: E, resSeq: 191, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 376.0 Å3 d(Fe-oop): 0.129 Å |
| HIS | chainID: E, resSeq: 335, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
|||
2vr0-E-1003 |
sad. -0.17 ruf. -0.90 dom. +0.41 bre. -0.07 |
HIS | chainID: E, resSeq: 121, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 394.0 Å3 d(Fe-oop): 0.009 Å |
| HIS | chainID: E, resSeq: 233, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
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2vr0-E-1004 |
sad. +0.62 ruf. -1.15 dom. +0.16 bre. -0.06 |
HIS | chainID: E, resSeq: 320, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 386.0 Å3 d(Fe-oop): 0.181 Å |
| HIS | chainID: E, resSeq: 434, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
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2vr0-E-1005 |
sad. +0.50 ruf. -0.70 dom. +0.16 bre. -0.12 |
HIS | chainID: E, resSeq: 309, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 459.0 Å3 d(Fe-oop): 0.091 Å |
| HIS | chainID: E, resSeq: 353, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
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2vr0-F-1001 |
sad. -0.27 ruf. -0.26 dom. +0.30 bre. -0.23 |
MET | chainID: F, resSeq: 49, molecule: NAPC/NIRT CYTOCHROME C FAMILY PROTEIN |
oxidoreductase oligomeric count: 6 pocket vol.: 545.0 Å3 d(Fe-oop): 0.211 Å |
| ASP | chainID: F, resSeq: 89, molecule: NAPC/NIRT CYTOCHROME C FAMILY PROTEIN |
|||
2vr0-F-1002 |
sad. +0.24 ruf. -0.49 dom. +0.10 bre. -0.16 |
HIS | chainID: F, resSeq: 70, molecule: NAPC/NIRT CYTOCHROME C FAMILY PROTEIN |
oxidoreductase oligomeric count: 6 pocket vol.: 430.0 Å3 d(Fe-oop): 0.119 Å |
| HIS | chainID: F, resSeq: 145, molecule: NAPC/NIRT CYTOCHROME C FAMILY PROTEIN |
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2vr0-F-1003 |
sad. -0.17 ruf. -1.15 dom. +0.20 bre. +0.09 |
HIS | chainID: F, resSeq: 61, molecule: NAPC/NIRT CYTOCHROME C FAMILY PROTEIN |
oxidoreductase oligomeric count: 6 pocket vol.: 472.0 Å3 d(Fe-oop): 0.101 Å |
| HIS | chainID: F, resSeq: 120, molecule: NAPC/NIRT CYTOCHROME C FAMILY PROTEIN |
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2vr0-F-1004 |
sad. +0.22 ruf. -0.52 dom. +0.01 bre. -0.10 |
LYS | chainID: D, resSeq: 331, molecule: CYTOCHROME C NITRITE REDUCTASE, CATALYTIC SUBUNIT NFRA |
oxidoreductase oligomeric count: 6 pocket vol.: 428.0 Å3 d(Fe-oop): 0.034 Å |
| HIS | chainID: F, resSeq: 140, molecule: NAPC/NIRT CYTOCHROME C FAMILY PROTEIN |
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