Browser
Protein data
function: oxidoreductaseexperiment: X-RAY DIFFRACTION
resolution: 1.74 Å
axial ligand #1: HIS
chainID: D,resSeq: 286,
Coordination distance[Å]: 2.076
molecule: Cytochrome c-552
EC number: 1.7.2.2
Organism: Escherichia coli
axial ligand #2: HIS
chainID: D,resSeq: 393,
Coordination distance[Å]: 2.067
molecule: same as ligand #1
List of other hemes in pdb:2rdz
| ID of heme | Distortion | Axial ligands on heme | Function & structure | |
|---|---|---|---|---|
2rdz-A-1 |
sad. +0.56 ruf. -0.63 dom. +0.21 bre. -0.22 |
LYS | chainID: A, resSeq: 126, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 442.0 Å3 d(Fe-oop): 0.024 Å |
| HOH | chainID: A, resSeq: 563, molecule: water |
|||
2rdz-A-2 |
sad. +0.55 ruf. -0.71 dom. -0.07 bre. -0.20 |
HIS | chainID: A, resSeq: 164, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 345.0 Å3 d(Fe-oop): 0.064 Å |
| HIS | chainID: A, resSeq: 301, molecule: Cytochrome c-552 |
|||
2rdz-A-3 |
sad. -0.05 ruf. -0.76 dom. +0.14 bre. -0.25 |
HIS | chainID: A, resSeq: 94, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 409.0 Å3 d(Fe-oop): 0.047 Å |
| HIS | chainID: A, resSeq: 213, molecule: Cytochrome c-552 |
|||
2rdz-A-4 |
sad. -0.24 ruf. -1.01 dom. +0.15 bre. -0.14 |
HIS | chainID: A, resSeq: 286, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 427.0 Å3 d(Fe-oop): 0.048 Å |
| HIS | chainID: A, resSeq: 393, molecule: Cytochrome c-552 |
|||
2rdz-A-5 |
sad. +0.13 ruf. -0.53 dom. +0.26 bre. -0.19 |
HIS | chainID: A, resSeq: 275, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 482.0 Å3 d(Fe-oop): 0.044 Å |
| HIS | chainID: A, resSeq: 318, molecule: Cytochrome c-552 |
|||
2rdz-B-1 |
sad. +0.62 ruf. -0.54 dom. +0.17 bre. -0.24 |
LYS | chainID: B, resSeq: 126, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 436.0 Å3 d(Fe-oop): 0.015 Å |
| HOH | chainID: B, resSeq: 522, molecule: water |
|||
2rdz-B-2 |
sad. +0.53 ruf. -0.69 dom. -0.09 bre. -0.28 |
HIS | chainID: B, resSeq: 164, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 362.0 Å3 d(Fe-oop): 0.074 Å |
| HIS | chainID: B, resSeq: 301, molecule: Cytochrome c-552 |
|||
2rdz-B-3 |
sad. -0.11 ruf. -0.82 dom. +0.15 bre. -0.21 |
HIS | chainID: B, resSeq: 94, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 423.0 Å3 d(Fe-oop): 0.055 Å |
| HIS | chainID: B, resSeq: 213, molecule: Cytochrome c-552 |
|||
2rdz-B-4 |
sad. -0.29 ruf. -1.00 dom. +0.17 bre. -0.14 |
HIS | chainID: B, resSeq: 286, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 434.0 Å3 d(Fe-oop): 0.067 Å |
| HIS | chainID: B, resSeq: 393, molecule: Cytochrome c-552 |
|||
2rdz-B-5 |
sad. +0.18 ruf. -0.41 dom. +0.24 bre. -0.17 |
HIS | chainID: B, resSeq: 275, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 505.0 Å3 d(Fe-oop): 0.056 Å |
| HIS | chainID: B, resSeq: 318, molecule: Cytochrome c-552 |
|||
2rdz-C-1 |
sad. +0.61 ruf. -0.52 dom. +0.24 bre. -0.22 |
LYS | chainID: C, resSeq: 126, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 447.0 Å3 d(Fe-oop): 0.004 Å |
| HOH | chainID: C, resSeq: 558, molecule: water |
|||
2rdz-C-2 |
sad. +0.55 ruf. -0.73 dom. -0.10 bre. -0.26 |
HIS | chainID: C, resSeq: 164, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 355.0 Å3 d(Fe-oop): 0.093 Å |
| HIS | chainID: C, resSeq: 301, molecule: Cytochrome c-552 |
|||
2rdz-C-3 |
sad. -0.12 ruf. -0.77 dom. +0.13 bre. -0.22 |
HIS | chainID: C, resSeq: 94, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 427.0 Å3 d(Fe-oop): 0.083 Å |
| HIS | chainID: C, resSeq: 213, molecule: Cytochrome c-552 |
|||
2rdz-C-4 |
sad. -0.18 ruf. -0.98 dom. +0.15 bre. -0.17 |
HIS | chainID: C, resSeq: 286, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 463.0 Å3 d(Fe-oop): 0.049 Å |
| HIS | chainID: C, resSeq: 393, molecule: Cytochrome c-552 |
|||
2rdz-C-5 |
sad. +0.11 ruf. -0.51 dom. +0.26 bre. -0.25 |
HIS | chainID: C, resSeq: 275, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 484.0 Å3 d(Fe-oop): 0.060 Å |
| HIS | chainID: C, resSeq: 318, molecule: Cytochrome c-552 |
|||
2rdz-D-1 |
sad. +0.58 ruf. -0.51 dom. +0.19 bre. -0.24 |
LYS | chainID: D, resSeq: 126, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 447.0 Å3 d(Fe-oop): 0.037 Å |
| HOH | chainID: D, resSeq: 487, molecule: water |
|||
2rdz-D-2 |
sad. +0.55 ruf. -0.60 dom. -0.12 bre. -0.24 |
HIS | chainID: D, resSeq: 164, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 350.0 Å3 d(Fe-oop): 0.063 Å |
| HIS | chainID: D, resSeq: 301, molecule: Cytochrome c-552 |
|||
2rdz-D-3 |
sad. -0.17 ruf. -0.73 dom. +0.13 bre. -0.19 |
HIS | chainID: D, resSeq: 94, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 411.0 Å3 d(Fe-oop): 0.032 Å |
| HIS | chainID: D, resSeq: 213, molecule: Cytochrome c-552 |
|||
2rdz-D-5 |
sad. +0.19 ruf. -0.42 dom. +0.22 bre. -0.17 |
HIS | chainID: D, resSeq: 275, molecule: Cytochrome c-552 |
oxidoreductase oligomeric count: 2 pocket vol.: 477.0 Å3 d(Fe-oop): 0.041 Å |
| HIS | chainID: D, resSeq: 318, molecule: Cytochrome c-552 |
|||