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PyDISH No: 04136

PDB: 2ot4,
chainID: A, resSeq: 1002
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 1.5 Å

axial ligand #1: HIS

chainID: A,
resSeq: 39,
Coordination distance[Å]: 1.972
molecule: Eight-heme nitrite reductase
Organism: Thioalkalivibrio nitratireducens

axial ligand #2: HIS

chainID: A,
resSeq: 234,
Coordination distance[Å]: 1.965
molecule: same as ligand #1

List of other hemes in pdb:2ot4

ID of heme	Distortion	Axial ligands on heme		Function & structure
2ot4-A-1004	`sad. +0.55 ruf. -0.45 dom. +0.14 bre. -0.04`	LYS	chainID: A, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 408.0 Å³ d(Fe-oop): 0.015 Å
2ot4-A-1004	`sad. +0.55 ruf. -0.45 dom. +0.14 bre. -0.04`	HOH	chainID: A, resSeq: 2972, molecule: water
2ot4-A-1005	`sad. +1.14 ruf. -0.37 dom. -0.04 bre. -0.00`	HIS	chainID: A, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 476.0 Å³ d(Fe-oop): 0.007 Å
2ot4-A-1005	`sad. +1.14 ruf. -0.37 dom. -0.04 bre. -0.00`	HIS	chainID: A, resSeq: 398, molecule: Eight-heme nitrite reductase
2ot4-A-1006	`sad. -0.23 ruf. -0.77 dom. +0.18 bre. -0.02`	HIS	chainID: A, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 412.0 Å³ d(Fe-oop): 0.003 Å
2ot4-A-1006	`sad. -0.23 ruf. -0.77 dom. +0.18 bre. -0.02`	HIS	chainID: A, resSeq: 300, molecule: Eight-heme nitrite reductase
2ot4-A-1007	`sad. +0.76 ruf. -0.66 dom. -0.10 bre. +0.02`	HIS	chainID: A, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 433.0 Å³ d(Fe-oop): 0.022 Å
2ot4-A-1007	`sad. +0.76 ruf. -0.66 dom. -0.10 bre. +0.02`	HIS	chainID: A, resSeq: 491, molecule: Eight-heme nitrite reductase
2ot4-A-1008	`sad. -0.47 ruf. -0.89 dom. +0.17 bre. +0.05`	HIS	chainID: A, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 649.0 Å³ d(Fe-oop): 0.027 Å
2ot4-A-1008	`sad. -0.47 ruf. -0.89 dom. +0.17 bre. +0.05`	HIS	chainID: A, resSeq: 415, molecule: Eight-heme nitrite reductase
2ot4-A-1003	`sad. +0.35 ruf. -0.55 dom. +0.00 bre. -0.04`	HIS	chainID: A, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 511.0 Å³ d(Fe-oop): 0.036 Å
2ot4-A-1003	`sad. +0.35 ruf. -0.55 dom. +0.00 bre. -0.04`	HIS	chainID: A, resSeq: 70, molecule: Eight-heme nitrite reductase
2ot4-A-1001	`sad. +0.04 ruf. -0.30 dom. -0.03 bre. -0.10`	HIS	chainID: A, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 425.0 Å³ d(Fe-oop): 0.034 Å
2ot4-A-1001	`sad. +0.04 ruf. -0.30 dom. -0.03 bre. -0.10`	HIS	chainID: A, resSeq: 44, molecule: Eight-heme nitrite reductase
2ot4-B-1004	`sad. +0.54 ruf. -0.48 dom. +0.15 bre. -0.05`	LYS	chainID: B, resSeq: 188, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 402.0 Å³ d(Fe-oop): 0.010 Å
2ot4-B-1004	`sad. +0.54 ruf. -0.48 dom. +0.15 bre. -0.05`	HOH	chainID: B, resSeq: 2765, molecule: water
2ot4-B-1005	`sad. +1.12 ruf. -0.35 dom. -0.03 bre. +0.04`	HIS	chainID: B, resSeq: 231, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 492.0 Å³ d(Fe-oop): 0.024 Å
2ot4-B-1005	`sad. +1.12 ruf. -0.35 dom. -0.03 bre. +0.04`	HIS	chainID: B, resSeq: 398, molecule: Eight-heme nitrite reductase
2ot4-B-1006	`sad. -0.24 ruf. -0.79 dom. +0.21 bre. -0.01`	HIS	chainID: B, resSeq: 119, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 409.0 Å³ d(Fe-oop): 0.008 Å
2ot4-B-1006	`sad. -0.24 ruf. -0.79 dom. +0.21 bre. -0.01`	HIS	chainID: B, resSeq: 300, molecule: Eight-heme nitrite reductase
2ot4-B-1007	`sad. +0.78 ruf. -0.67 dom. -0.13 bre. +0.00`	HIS	chainID: B, resSeq: 383, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 423.0 Å³ d(Fe-oop): 0.023 Å
2ot4-B-1007	`sad. +0.78 ruf. -0.67 dom. -0.13 bre. +0.00`	HIS	chainID: B, resSeq: 491, molecule: Eight-heme nitrite reductase
2ot4-B-1008	`sad. -0.41 ruf. -1.06 dom. +0.21 bre. +0.10`	HIS	chainID: B, resSeq: 372, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 652.0 Å³ d(Fe-oop): 0.005 Å
2ot4-B-1008	`sad. -0.41 ruf. -1.06 dom. +0.21 bre. +0.10`	HIS	chainID: B, resSeq: 415, molecule: Eight-heme nitrite reductase
2ot4-B-1002	`sad. -0.11 ruf. -0.39 dom. -0.00 bre. -0.05`	HIS	chainID: B, resSeq: 39, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 355.0 Å³ d(Fe-oop): 0.026 Å
2ot4-B-1002	`sad. -0.11 ruf. -0.39 dom. -0.00 bre. -0.05`	HIS	chainID: B, resSeq: 234, molecule: Eight-heme nitrite reductase
2ot4-B-1003	`sad. +0.30 ruf. -0.53 dom. -0.01 bre. -0.03`	HIS	chainID: B, resSeq: 30, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 515.0 Å³ d(Fe-oop): 0.021 Å
2ot4-B-1003	`sad. +0.30 ruf. -0.53 dom. -0.01 bre. -0.03`	HIS	chainID: B, resSeq: 70, molecule: Eight-heme nitrite reductase
2ot4-B-1001	`sad. -0.12 ruf. -0.36 dom. -0.07 bre. -0.11`	HIS	chainID: B, resSeq: 18, molecule: Eight-heme nitrite reductase	oxidoreductase oligomeric count: 6 pocket vol.: 411.0 Å³ d(Fe-oop): 0.044 Å
2ot4-B-1001	`sad. -0.12 ruf. -0.36 dom. -0.07 bre. -0.11`	HIS	chainID: B, resSeq: 44, molecule: Eight-heme nitrite reductase