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PyDISH No: 04057

PDB: 2nox,
chainID: F, resSeq: 500
heme type: B

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.4 Å

axial ligand #1: HIS

chainID: F,
resSeq: 257,
Coordination distance[Å]: 2.295
molecule: Tryptophan 2,3-dioxygenase
EC number: 1.13.11.11
Organism: Cupriavidus metallidurans

List of other hemes in pdb:2nox

ID of heme Distortion Axial ligands on heme Function & structure
2nox-A-500
sad. -0.05
ruf. -0.18
dom. -0.23
bre. -0.28
HIS chainID: A,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 428.0 Å3
d(Fe-oop): 0.212 Å
HOH chainID: A, resSeq: 614,
molecule: water
2nox-B-500
sad. -0.27
ruf. -0.18
dom. -0.17
bre. -0.29
HIS chainID: B,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 502.0 Å3
d(Fe-oop): 0.343 Å
Not assigned.
2nox-C-500
sad. -0.33
ruf. -0.36
dom. -0.08
bre. -0.30
HIS chainID: C,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 521.0 Å3
d(Fe-oop): 0.224 Å
Not assigned.
2nox-D-500
sad. -0.17
ruf. -0.55
dom. -0.26
bre. -0.36
HIS chainID: D,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 491.0 Å3
d(Fe-oop): 0.291 Å
HOH chainID: D, resSeq: 585,
molecule: water
2nox-E-500
sad. -0.08
ruf. -0.32
dom. -0.15
bre. -0.15
HIS chainID: E,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 502.0 Å3
d(Fe-oop): 0.323 Å
HOH chainID: E, resSeq: 575,
molecule: water
2nox-G-500
sad. -0.27
ruf. -0.40
dom. -0.20
bre. -0.40
HIS chainID: G,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 503.0 Å3
d(Fe-oop): 0.413 Å
Not assigned.
2nox-H-500
sad. -0.10
ruf. -0.25
dom. -0.20
bre. -0.30
HIS chainID: H,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 439.0 Å3
d(Fe-oop): 0.338 Å
Not assigned.
2nox-I-500
sad. +0.04
ruf. -0.40
dom. -0.04
bre. -0.16
HIS chainID: I,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 434.0 Å3
d(Fe-oop): 0.253 Å
Not assigned.
2nox-J-500
sad. -0.17
ruf. -0.36
dom. -0.19
bre. -0.15
HIS chainID: J,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 496.0 Å3
d(Fe-oop): 0.349 Å
Not assigned.
2nox-K-500
sad. -0.14
ruf. -0.40
dom. -0.10
bre. -0.14
HIS chainID: K,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 512.0 Å3
d(Fe-oop): 0.279 Å
Not assigned.
2nox-L-500
sad. -0.22
ruf. -0.43
dom. -0.18
bre. -0.21
HIS chainID: L,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 460.0 Å3
d(Fe-oop): 0.295 Å
Not assigned.
2nox-M-500
sad. -0.11
ruf. -0.40
dom. -0.26
bre. -0.20
HIS chainID: M,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 487.0 Å3
d(Fe-oop): 0.380 Å
Not assigned.
2nox-N-500
sad. -0.05
ruf. -0.59
dom. -0.11
bre. -0.20
HIS chainID: N,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 473.0 Å3
d(Fe-oop): 0.354 Å
Not assigned.
2nox-O-500
sad. -0.38
ruf. -0.36
dom. -0.09
bre. -0.28
HIS chainID: O,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 508.0 Å3
d(Fe-oop): 0.379 Å
Not assigned.
2nox-P-500
sad. -0.04
ruf. -0.13
dom. -0.12
bre. -0.27
HIS chainID: P,
resSeq: 257,
molecule: Tryptophan 2,3-dioxygenase
oxidoreductase
oligomeric count: 4
pocket vol.: 448.0 Å3
d(Fe-oop): 0.260 Å
HOH chainID: P, resSeq: 565,
molecule: water