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PyDISH No: 03810

PDB: 2ibz,
chainID: D, resSeq: 3
heme type: C

distortion

Protein data

function: oxidoreductase
experiment: X-RAY DIFFRACTION
resolution: 2.3 Å

axial ligand #1: HIS

chainID: D,
resSeq: 105,
Coordination distance[Å]: 1.963
molecule: Cytochrome c1, heme protein, mitochondrial precursor
EC number: 1.10.2.2
Organism: Saccharomyces cerevisiae

axial ligand #2: MET

chainID: D,
resSeq: 225,
Coordination distance[Å]: 2.157
molecule: same as ligand #1

List of other hemes in pdb:2ibz

ID of heme Distortion Axial ligands on heme Function & structure
2ibz-C-401
sad. +0.19
ruf. -0.04
dom. -0.07
bre. -0.10
HIS chainID: C,
resSeq: 82,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 11
pocket vol.: 402.0 Å3
d(Fe-oop): 0.007 Å
HIS chainID: C, resSeq: 183,
molecule: Cytochrome b
2ibz-C-402
sad. -0.64
ruf. -0.37
dom. +0.20
bre. -0.17
HIS chainID: C,
resSeq: 96,
molecule: Cytochrome b
oxidoreductase
oligomeric count: 11
pocket vol.: 408.0 Å3
d(Fe-oop): 0.014 Å
HIS chainID: C, resSeq: 197,
molecule: Cytochrome b