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PyDISH No: 03493

PDB: 2e84,
chainID: A, resSeq: 1301
heme type: C

distortion

Protein data

function: electron transporter
experiment: X-RAY DIFFRACTION
resolution: 2.7 Å

axial ligand #1: HIS

chainID: A,
resSeq: 66,
Coordination distance[Å]: 2.248
molecule: High-molecular-weight cytochrome c
Organism: Desulfovibrio vulgaris str. 'Miyazaki F'

axial ligand #2: HIS

chainID: A,
resSeq: 87,
Coordination distance[Å]: 2.249
molecule: same as ligand #1

List of other hemes in pdb:2e84

ID of heme	Distortion	Axial ligands on heme		Function & structure
2e84-A-1302	`sad. +0.10 ruf. -0.07 dom. +0.04 bre. -0.17`	HIS	chainID: A, resSeq: 69, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 482.0 Å³ d(Fe-oop): 0.019 Å
2e84-A-1302	`sad. +0.10 ruf. -0.07 dom. +0.04 bre. -0.17`	HIS	chainID: A, resSeq: 122, molecule: High-molecular-weight cytochrome c
2e84-A-1303	`sad. +0.02 ruf. -0.01 dom. -0.05 bre. -0.17`	HIS	chainID: A, resSeq: 115, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 393.0 Å³ d(Fe-oop): 0.014 Å
2e84-A-1303	`sad. +0.02 ruf. -0.01 dom. -0.05 bre. -0.17`	HIS	chainID: A, resSeq: 143, molecule: High-molecular-weight cytochrome c
2e84-A-1304	`sad. +0.04 ruf. -0.11 dom. +0.01 bre. -0.12`	HIS	chainID: A, resSeq: 162, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 449.0 Å³ d(Fe-oop): 0.006 Å
2e84-A-1304	`sad. +0.04 ruf. -0.11 dom. +0.01 bre. -0.12`	HIS	chainID: A, resSeq: 185, molecule: High-molecular-weight cytochrome c
2e84-A-1305	`sad. -0.03 ruf. -0.01 dom. -0.05 bre. -0.18`	HIS	chainID: A, resSeq: 186, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 489.0 Å³ d(Fe-oop): 0.018 Å
2e84-A-1305	`sad. -0.03 ruf. -0.01 dom. -0.05 bre. -0.18`	HIS	chainID: A, resSeq: 209, molecule: High-molecular-weight cytochrome c
2e84-A-1306	`sad. +0.06 ruf. -0.08 dom. +0.00 bre. -0.15`	HIS	chainID: A, resSeq: 165, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 443.0 Å³ d(Fe-oop): 0.005 Å
2e84-A-1306	`sad. +0.06 ruf. -0.08 dom. +0.00 bre. -0.15`	HIS	chainID: A, resSeq: 232, molecule: High-molecular-weight cytochrome c
2e84-A-1307	`sad. +0.11 ruf. -0.10 dom. -0.01 bre. -0.16`	HIS	chainID: A, resSeq: 225, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 494.0 Å³ d(Fe-oop): 0.003 Å
2e84-A-1307	`sad. +0.11 ruf. -0.10 dom. -0.01 bre. -0.16`	HIS	chainID: A, resSeq: 253, molecule: High-molecular-weight cytochrome c
2e84-A-1308	`sad. +0.01 ruf. -0.11 dom. -0.01 bre. -0.15`	HIS	chainID: A, resSeq: 306, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 478.0 Å³ d(Fe-oop): 0.003 Å
2e84-A-1308	`sad. +0.01 ruf. -0.11 dom. -0.01 bre. -0.15`	HIS	chainID: A, resSeq: 320, molecule: High-molecular-weight cytochrome c
2e84-A-1309	`sad. +0.12 ruf. -0.03 dom. -0.07 bre. -0.19`	HIS	chainID: A, resSeq: 321, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 465.0 Å³ d(Fe-oop): 0.021 Å
2e84-A-1309	`sad. +0.12 ruf. -0.03 dom. -0.07 bre. -0.19`	HIS	chainID: A, resSeq: 331, molecule: High-molecular-weight cytochrome c
2e84-A-1310	`sad. +0.11 ruf. -0.07 dom. +0.03 bre. -0.14`	HIS	chainID: A, resSeq: 309, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 458.0 Å³ d(Fe-oop): 0.016 Å
2e84-A-1310	`sad. +0.11 ruf. -0.07 dom. +0.03 bre. -0.14`	HIS	chainID: A, resSeq: 361, molecule: High-molecular-weight cytochrome c
2e84-A-1311	`sad. +0.09 ruf. -0.01 dom. -0.09 bre. -0.15`	HIS	chainID: A, resSeq: 374, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 407.0 Å³ d(Fe-oop): 0.029 Å
2e84-A-1311	`sad. +0.09 ruf. -0.01 dom. -0.09 bre. -0.15`	HIS	chainID: A, resSeq: 481, molecule: High-molecular-weight cytochrome c
2e84-A-1312	`sad. -0.10 ruf. -0.00 dom. -0.02 bre. -0.17`	HIS	chainID: A, resSeq: 349, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 394.0 Å³ d(Fe-oop): 0.004 Å
2e84-A-1312	`sad. -0.10 ruf. -0.00 dom. -0.02 bre. -0.17`	HIS	chainID: A, resSeq: 393, molecule: High-molecular-weight cytochrome c
2e84-A-1313	`sad. -0.01 ruf. -0.01 dom. -0.04 bre. -0.16`	HIS	chainID: A, resSeq: 460, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 512.0 Å³ d(Fe-oop): 0.011 Å
2e84-A-1313	`sad. -0.01 ruf. -0.01 dom. -0.04 bre. -0.16`	HIS	chainID: A, resSeq: 492, molecule: High-molecular-weight cytochrome c
2e84-A-1314	`sad. -0.07 ruf. -0.06 dom. -0.01 bre. -0.18`	HIS	chainID: A, resSeq: 493, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 464.0 Å³ d(Fe-oop): 0.000 Å
2e84-A-1314	`sad. -0.07 ruf. -0.06 dom. -0.01 bre. -0.18`	HIS	chainID: A, resSeq: 508, molecule: High-molecular-weight cytochrome c
2e84-A-1315	`sad. +0.07 ruf. -0.04 dom. +0.10 bre. -0.18`	HIS	chainID: A, resSeq: 534, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 536.0 Å³ d(Fe-oop): 0.041 Å
2e84-A-1315	`sad. +0.07 ruf. -0.04 dom. +0.10 bre. -0.18`	Not assigned.
2e84-A-1316	`sad. +0.01 ruf. -0.03 dom. -0.05 bre. -0.21`	HIS	chainID: A, resSeq: 527, molecule: High-molecular-weight cytochrome c	electron transporter oligomeric count: 1 pocket vol.: 428.0 Å³ d(Fe-oop): 0.015 Å
2e84-A-1316	`sad. +0.01 ruf. -0.03 dom. -0.05 bre. -0.21`	HIS	chainID: A, resSeq: 551, molecule: High-molecular-weight cytochrome c